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Promoted routes from BioProject

Catalogue links from BioProject that were surveyed as routes: each at sample:3000 of its source's population (or the whole of it, where smaller), gated first on probe-families and hard-cases. A route here makes the catalogue mechanism's own request and reads it with the link survey's own extraction (routes.catalogue). The table is generated at build time from graph.PROMOTED. Within each direction, routes are listed in the order ranked() tries them, from the evidence and never by hand (how routes are ranked).

→ ae_experiment

Rank Route Corpus Date Queried Resolved Empty Failed Distinct Requests Pathologies
1 bioproject->ae_experiment:ena_filereport_aliases sample:3000@reprocessed-prj 2026-10-26 3,000 96 2,904 0 97 1 —
2 bioproject->ae_experiment:ena_browser_xml sample:3000@reprocessed-prj 2026-10-26 3,000 97 2,901 2 97 1 —
3 bioproject->ae_experiment:ena_xref_target sample:3000@reprocessed-prj 2026-10-26 3,000 4 2,996 0 4 1 —

→ bioproject

Rank Route Corpus Date Queried Resolved Empty Failed Distinct Requests Pathologies
1 bioproject->bioproject:ena_search_study_parent sample:3000@reprocessed-prj 2026-10-26 3,000 2,554 446 0 490 1 —
2 bioproject->bioproject:elink_bioproject_bioproject_d2u sample:3000@reprocessed-prj 2026-10-26 3,000 530 2,470 0 487 3 megalink-backend-flakiness

→ file

Rank Route Corpus Date Queried Resolved Empty Failed Distinct Requests Pathologies
1 bioproject->file:ena_filereport_fastq sample:3000@reprocessed-prj 2026-10-26 3,000 2,942 58 0 269,128 1 —
2 bioproject->file:ena_filereport_submitted sample:3000@reprocessed-prj 2026-10-26 3,000 139 2,861 0 29,698 1 —
3 bioproject->file:ena_filereport_bam sample:3000@reprocessed-prj 2026-10-26 3,000 58 2,942 0 1,470 1 —

→ geo_sample

Rank Route Corpus Date Queried Resolved Empty Failed Distinct Requests Pathologies
1 bioproject->geo_sample:ena_filereport_aliases sample:3000@reprocessed-prj 2026-10-26 3,000 2,520 480 0 51,547 1 —
2 bioproject->geo_sample:sra_be_runinfo sample:3000@reprocessed-prj 2026-10-26 3,000 2,520 480 0 51,560 1 sra-be-history-caps-at-5000-runs
3 bioproject->geo_sample:esearch_sra_runinfo sample:3000@reprocessed-prj 2026-10-26 3,000 2,521 479 0 51,566 2 efetch-returns-fewer-runs-than-esearch-counts

→ sample

Rank Route Corpus Date Queried Resolved Empty Failed Distinct Requests Pathologies
1 bioproject->sample:ena_filereport sample:3000@reprocessed-prj 2026-10-26 3,000 2,992 8 0 84,948 1 —
2 bioproject->sample:sra_be_runinfo sample:3000@reprocessed-prj 2026-10-26 3,000 2,993 7 0 84,965 1 sra-be-history-caps-at-5000-runs
3 bioproject->sample:esearch_sra_runinfo sample:3000@reprocessed-prj 2026-10-26 3,000 2,994 6 0 84,984 2 efetch-returns-fewer-runs-than-esearch-counts
4 bioproject->sample:esummary_sra sample:3000@reprocessed-prj 2026-10-26 3,000 2,994 6 0 84,984 2 esummary-500-uid-limit, esummary-sra-buries-accessions-in-expxml