Link survey results¶
What the link survey measured, link by link, over seeded draws
of 300 accessions of each source node: 300 BioProjects per issuing archive and all 137 DDBJ
ones, 300 runs per archive, and so on. Every table below is generated at build time from
link_splits.json, which is generated from the committed exports. A number on this page
therefore cannot drift from the verdicts it summarises.
How to read a row:
- Usable / queried is the count of accessions for which the link found something usable: reached, and every check made on what it found passed.
- Resolved · empty · failed are the survey's three outcomes.
- Status is the link's overall status. It is surveyed where any stratum found something usable.
- Rows are in link order. None of this is a ranking. At 300, a share carries up to ±5.7 points, enough to say a link answers always, sometimes or never, and too coarse to say which of two links answers better.
A row of zeros is usually not a failure. Where a shared node is stratified by archive, most cross-archive cells are empty by construction: a PRJEB's runs never name a DDBJ sample. A link is drawn on the route graph where any stratum found it usable.
The survey ran on 2026-10-19 and 2026-10-20 (UTC). 983 of the 1,031 links no route measures were surveyed. The 48 that were not are:
- the six SDL-on-project and SDL-on-study units, which failed their gate;
- every link out of an NCBI, DDBJ or EBI analysis. Those nodes have no population to draw from. The EBI one is recorded as such because its derivation found no analysis in any of 737 BioProjects.
Wave 1: INSDC samples¶
Links into an INSDC sample or a BioSample, and ENA's filereport between INSDC records.
What it found:
- ENA's
linksendpoint answers for a minority of projects. BioProject → BioSample throughlinks/studyfound BioSamples for 120 of 300 PRJEBs, 50 of 300 PRJNAs and none of 137 PRJDBs. ENA's ownfilereportfound them for 12,730 of 12,755 in its census (BioProject to BioSample). This fits the gate's finding thatlinks/samplestopped answering forSAMEA4437023: on this evidence the endpoint is not a route to anything. - Every BioSample names its INSDC sample, through three services. NCBI's BioSample record did so for 300 of 300 per archive, EBI's BioSamples for 297 to 299 (with 1 to 3 failures), and ENA's sample search for 289 to 299.
- The reverse holds too. An SRS, ERS or DRS gives its BioSample through EBI BioSamples' filter for 290 to 300 of 300, and through ENA's sample search for 288 to 300. ELink SRA → BioSample answered for 296 to 300 of 300 experiments per archive.
- An ArrayExpress SDRF names an INSDC sample less often than it names a study.
Comment[ENA_SAMPLE]and its kin named an ENA sample for 129 of 300 studies and an NCBI one for 87. Seven studies failed outright: their SDRF is not served. - No BioProject in this corpus has an EBI analysis, so
filereport's analysis result reached no sample at all. Those links are surveyed-none: they exist (the probe usedPRJEB44468) and never answer over this project's records.
| Link | Corpus | Usable / queried | Resolved · empty · failed | Distinct | Fit · unfit · ? (read) | Status |
|---|---|---|---|---|---|---|
bioproject->biosample:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 1754 | — | surveyed |
bioproject->biosample:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
297 / 300 | 297 · 3 · 0 | 35945 | — | surveyed |
bioproject->biosample:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 6360 | — | surveyed |
bioproject->biosample:ena_filereport_analysis |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->biosample:ena_filereport_analysis |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->biosample:ena_filereport_analysis |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->biosample:ena_links |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->biosample:ena_links |
sample:300@node:bioproject/ebi@reprocessed-prj |
120 / 300 | 120 · 180 · 0 | 9433 | — | surveyed |
bioproject->biosample:ena_links |
sample:300@node:bioproject/ncbi@reprocessed-prj |
50 / 300 | 50 · 250 · 0 | 1405 | — | surveyed |
bioproject->biosample:esummary_sra |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 1754 | — | surveyed |
bioproject->biosample:esummary_sra |
sample:300@node:bioproject/ebi@reprocessed-prj |
298 / 300 | 298 · 2 · 0 | 35959 | — | surveyed |
bioproject->biosample:esummary_sra |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 6342 | — | surveyed |
bioproject->biosample:sra_be_runinfo |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 1754 | — | surveyed |
bioproject->biosample:sra_be_runinfo |
sample:300@node:bioproject/ebi@reprocessed-prj |
297 / 300 | 297 · 3 · 0 | 35941 | — | surveyed |
bioproject->biosample:sra_be_runinfo |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 6272 | — | surveyed |
bioproject->sample_ddbj:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->sample_ddbj:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->sample_ddbj:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->sample_ebi:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->sample_ebi:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->sample_ebi:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->sample_ebi:ena_filereport_analysis |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->sample_ebi:ena_filereport_analysis |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->sample_ebi:ena_filereport_analysis |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->sample_ncbi:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->sample_ncbi:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->sample_ncbi:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->submission_ddbj:ena_filereport |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 192 | — | surveyed |
bioproject->submission_ddbj:ena_filereport |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->submission_ddbj:ena_filereport |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->submission_ebi:ena_filereport |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->submission_ebi:ena_filereport |
sample:300@node:bioproject/ebi@reprocessed-prj |
298 / 300 | 298 · 2 · 0 | 676 | — | surveyed |
bioproject->submission_ebi:ena_filereport |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->submission_ncbi:ena_filereport |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->submission_ncbi:ena_filereport |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->submission_ncbi:ena_filereport |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 352 | — | surveyed |
biosample->sample_ebi:ena_filereport_analysis |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->sample_ebi:ena_filereport_analysis |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->sample_ebi:ena_filereport_analysis |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ddbj:ena_filereport |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 100 | — | surveyed |
biosample->submission_ddbj:ena_filereport |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ddbj:ena_filereport |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ebi:ena_filereport |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ebi:ena_filereport |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 108 | — | surveyed |
biosample->submission_ebi:ena_filereport |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ncbi:ena_filereport |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ncbi:ena_filereport |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ncbi:ena_filereport |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 228 | — | surveyed |
experiment_ddbj->biosample:ddbj_dblink |
sample:300@node:experiment_ddbj@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 291 | — | surveyed |
experiment_ddbj->biosample:elink_sra_biosample |
sample:300@node:experiment_ddbj@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 291 | — | surveyed |
experiment_ddbj->biosample:esummary_sra |
sample:300@node:experiment_ddbj@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 291 | — | surveyed |
experiment_ddbj->biosample:sra_be_runinfo |
sample:300@node:experiment_ddbj@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 291 | — | surveyed |
experiment_ddbj->run_ddbj:ena_filereport |
sample:300@node:experiment_ddbj@reprocessed-srx |
275 / 300 | 275 · 25 · 0 | 375 | — | surveyed |
experiment_ddbj->submission_ddbj:ena_filereport |
sample:300@node:experiment_ddbj@reprocessed-srx |
275 / 300 | 275 · 25 · 0 | 108 | — | surveyed |
experiment_ebi->biosample:ddbj_dblink |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 285 | — | surveyed |
experiment_ebi->biosample:elink_sra_biosample |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 285 | — | surveyed |
experiment_ebi->biosample:esummary_sra |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 285 | — | surveyed |
experiment_ebi->biosample:sra_be_runinfo |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 285 | — | surveyed |
experiment_ebi->run_ebi:ena_filereport |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 558 | — | surveyed |
experiment_ebi->submission_ebi:ena_filereport |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 153 | — | surveyed |
experiment_ncbi->biosample:ddbj_dblink |
sample:300@node:experiment_ncbi@reprocessed-srx |
296 / 300 | 296 · 4 · 0 | 296 | — | surveyed |
experiment_ncbi->biosample:elink_sra_biosample |
sample:300@node:experiment_ncbi@reprocessed-srx |
296 / 300 | 296 · 4 · 0 | 296 | — | surveyed |
experiment_ncbi->biosample:esummary_sra |
sample:300@node:experiment_ncbi@reprocessed-srx |
296 / 300 | 296 · 4 · 0 | 296 | — | surveyed |
experiment_ncbi->biosample:sra_be_runinfo |
sample:300@node:experiment_ncbi@reprocessed-srx |
296 / 300 | 296 · 4 · 0 | 296 | — | surveyed |
experiment_ncbi->submission_ncbi:ena_filereport |
sample:300@node:experiment_ncbi@reprocessed-srx |
296 / 300 | 296 · 4 · 0 | 287 | — | surveyed |
geo_sample->biosample:elink_gds_biosample |
sample:300@node:geo_sample@reprocessed-sample |
300 / 300 | 300 · 0 · 0 | 300 | — | surveyed |
geo_sample->biosample:esummary_sra |
sample:300@node:geo_sample@reprocessed-sample |
286 / 300 | 286 · 14 · 0 | 286 | — | surveyed |
geo_sample->biosample:sra_be_runinfo |
sample:300@node:geo_sample@reprocessed-sample |
285 / 300 | 285 · 15 · 0 | 285 | — | surveyed |
geo_series->biosample:ddbj_dblink |
sample:300@node:geo_series@reprocessed-gse |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
geo_series->biosample:elink_gds_biosample |
sample:300@node:geo_series@reprocessed-gse |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
geo_series->sample_ncbi:ddbj_dblink |
sample:300@node:geo_series@reprocessed-gse |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
run_ddbj->biosample:ddbj_dblink |
sample:300@node:run_ddbj@reprocessed-srr |
300 / 300 | 300 · 0 · 0 | 249 | — | surveyed |
run_ddbj->biosample:esummary_sra |
sample:300@node:run_ddbj@reprocessed-srr |
300 / 300 | 300 · 0 · 0 | 249 | — | surveyed |
run_ddbj->biosample:sra_be_runinfo |
sample:300@node:run_ddbj@reprocessed-srr |
300 / 300 | 300 · 0 · 0 | 249 | — | surveyed |
run_ddbj->submission_ddbj:ena_filereport |
sample:300@node:run_ddbj@reprocessed-srr |
279 / 300 | 279 · 21 · 0 | 96 | — | surveyed |
run_ebi->biosample:ddbj_dblink |
sample:300@node:run_ebi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 279 | — | surveyed |
run_ebi->biosample:esummary_sra |
sample:300@node:run_ebi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 279 | — | surveyed |
run_ebi->biosample:sra_be_runinfo |
sample:300@node:run_ebi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 279 | — | surveyed |
run_ebi->submission_ebi:ena_filereport |
sample:300@node:run_ebi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 149 | — | surveyed |
run_ncbi->biosample:ddbj_dblink |
sample:300@node:run_ncbi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 296 | — | surveyed |
run_ncbi->biosample:esummary_sra |
sample:300@node:run_ncbi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 296 | — | surveyed |
run_ncbi->biosample:sra_be_runinfo |
sample:300@node:run_ncbi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 296 | — | surveyed |
run_ncbi->submission_ncbi:ena_filereport |
sample:300@node:run_ncbi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 274 | — | surveyed |
sample_ddbj->submission_ddbj:ena_filereport |
sample:300@node:sample_ddbj@reprocessed-srs |
283 / 300 | 283 · 17 · 0 | 110 | — | surveyed |
sample_ebi->biosample:ena_filereport_analysis |
sample:300@node:sample_ebi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ebi->submission_ebi:ena_filereport |
sample:300@node:sample_ebi@reprocessed-srs |
300 / 300 | 300 · 0 · 0 | 182 | — | surveyed |
sample_ncbi->submission_ncbi:ena_filereport |
sample:300@node:sample_ncbi@reprocessed-srs |
299 / 300 | 299 · 1 · 0 | 289 | — | surveyed |
study_ddbj->biosample:ddbj_dblink |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
study_ddbj->submission_ddbj:ena_filereport |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 192 | — | surveyed |
study_ebi->biosample:ddbj_dblink |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ebi->biosample:ena_filereport_analysis |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ebi->sample_ebi:ena_filereport_analysis |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ebi->submission_ebi:ena_filereport |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 647 | — | surveyed |
study_ncbi->biosample:ddbj_dblink |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ncbi->submission_ncbi:ena_filereport |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 322 | — | surveyed |
submission_ddbj->bioproject:ena_filereport |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
96 / 96 | 96 · 0 · 0 | 95 | — | surveyed |
submission_ddbj->biosample:ddbj_dblink |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
0 / 96 | 0 · 96 · 0 | 0 | — | surveyed-none |
submission_ddbj->biosample:ena_filereport |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
96 / 96 | 96 · 0 · 0 | 1088 | — | surveyed |
submission_ddbj->biosample:esummary_sra |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
96 / 96 | 96 · 0 · 0 | 1279 | — | surveyed |
submission_ddbj->experiment_ddbj:ena_filereport |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
96 / 96 | 96 · 0 · 0 | 1139 | — | surveyed |
submission_ddbj->run_ddbj:ena_filereport |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
96 / 96 | 96 · 0 · 0 | 1549 | — | surveyed |
submission_ddbj->sample_ddbj:ddbj_dblink |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
96 / 96 | 96 · 0 · 0 | 1088 | — | surveyed |
submission_ddbj->sample_ddbj:ena_filereport |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
95 / 96 | 95 · 1 · 0 | 1077 | — | surveyed |
submission_ddbj->sample_ddbj:esummary_sra |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
96 / 96 | 96 · 0 · 0 | 1279 | — | surveyed |
submission_ddbj->study_ddbj:ena_filereport |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
95 / 96 | 95 · 1 · 0 | 94 | — | surveyed |
submission_ebi->bioproject:ena_filereport |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
149 / 149 | 149 · 0 · 0 | 139 | — | surveyed |
submission_ebi->biosample:ddbj_dblink |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
0 / 149 | 0 · 149 · 0 | 0 | — | surveyed-none |
submission_ebi->biosample:ena_filereport |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
149 / 149 | 149 · 0 · 0 | 6246 | — | surveyed |
submission_ebi->biosample:esummary_sra |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
149 / 149 | 149 · 0 · 0 | 6250 | — | surveyed |
submission_ebi->experiment_ebi:ena_filereport |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
149 / 149 | 149 · 0 · 0 | 9484 | — | surveyed |
submission_ebi->run_ebi:ena_filereport |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
149 / 149 | 149 · 0 · 0 | 16812 | — | surveyed |
submission_ebi->sample_ebi:ddbj_dblink |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
113 / 149 | 113 · 36 · 0 | 3163 | — | surveyed |
submission_ebi->sample_ebi:ena_filereport |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
149 / 149 | 149 · 0 · 0 | 6233 | — | surveyed |
submission_ebi->sample_ebi:esummary_sra |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
149 / 149 | 149 · 0 · 0 | 6237 | — | surveyed |
submission_ebi->study_ebi:ena_filereport |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
149 / 149 | 149 · 0 · 0 | 135 | — | surveyed |
submission_ncbi->bioproject:ena_filereport |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
274 / 274 | 274 · 0 · 0 | 272 | — | surveyed |
submission_ncbi->biosample:ddbj_dblink |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
0 / 274 | 0 · 274 · 0 | 0 | — | surveyed-none |
submission_ncbi->biosample:ena_filereport |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
274 / 274 | 274 · 0 · 0 | 7597 | — | surveyed |
submission_ncbi->biosample:esummary_sra |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
274 / 274 | 274 · 0 · 0 | 7978 | — | surveyed |
submission_ncbi->experiment_ncbi:ena_filereport |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
274 / 274 | 274 · 0 · 0 | 9204 | — | surveyed |
submission_ncbi->run_ncbi:ena_filereport |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
274 / 274 | 274 · 0 · 0 | 31790 | — | surveyed |
submission_ncbi->sample_ncbi:ddbj_dblink |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
272 / 274 | 272 · 2 · 0 | 7590 | — | surveyed |
submission_ncbi->sample_ncbi:ena_filereport |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
274 / 274 | 274 · 0 · 0 | 7597 | — | surveyed |
submission_ncbi->sample_ncbi:esummary_sra |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
274 / 274 | 274 · 0 · 0 | 7978 | — | surveyed |
submission_ncbi->study_ncbi:ena_filereport |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
274 / 274 | 274 · 0 · 0 | 272 | — | surveyed |
Wave 2: metadata documents¶
Links into a metadata document. A document counts as usable only if it downloads and parses with the parser this project already uses for it, and names the record asked for.
What it found:
- Every archive's own document answers for nearly every record of its own. GEO's SOFT,
MiniML, series matrix and
acc.cgianswered for 300 of 300 series or samples. NCBI's SRA XML and runinfo answered for 299 or 300 runs and experiments in every archive. DDBJ's search entry answered for 296 to 300. NCBI's and EBI's BioSample records answered for 297 to 300 BioSamples of every archive. - ENA does not hold about 8% of DDBJ's records. ENA's browser XML answered 404 for 25 of
300 DRXs and 21 of 300 DRRs. For exactly those records ENA's
filereportanswers with a table that does not name them, so it downloads and does not parse. For NCBI and EBI records both answered for 296 to 300. - DDBJ's DRA XML holds a fifth to a third of other archives' records less. It answered 404 for 66 of 300 SRRs, 80 SRXs, 60 ERRs and 103 ERXs, and for none of DDBJ's own. DDBJ's search entry answered for the same records. So DDBJ indexes them, and the DRA XML path does not serve them.
- An ArrayExpress study's IDF or SDRF is missing for 8 to 10 of 300 studies, as 404s. That is the same population as the 11 SDRF failures of the ArrayExpress file route.
- runinfo answered with a table that did not name the experiment asked for 4 of 300 SRXs.
| Link | Corpus | Usable / queried | Resolved · empty · failed | Distinct | Fit · unfit · ? (read) | Status |
|---|---|---|---|---|---|---|
ae_experiment->metadata_ae:biostudies_idf |
sample:300@node:ae_experiment@arrayexpress-ena |
292 / 300 (downloads 292/292; parses 292/292) | 292 · 0 · 8 | 292 | — | surveyed |
ae_experiment->metadata_ae:biostudies_sdrf |
sample:300@node:ae_experiment@arrayexpress-ena |
290 / 300 (downloads 290/290; parses 290/290) | 290 · 0 · 10 | 290 | — | surveyed |
biosample->metadata_biosample:biosample_record |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
biosample->metadata_biosample:biosample_record |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
biosample->metadata_biosample:biosample_record |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
biosample->metadata_biosample:biosamples_record |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
297 / 300 (downloads 297/297; parses 297/297) | 297 · 0 · 3 | 297 | — | surveyed |
biosample->metadata_biosample:biosamples_record |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
299 / 300 (downloads 299/299; parses 299/299) | 299 · 0 · 1 | 299 | — | surveyed |
biosample->metadata_biosample:biosamples_record |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
297 / 300 (downloads 297/297; parses 297/297) | 297 · 0 · 3 | 297 | — | surveyed |
experiment_ddbj->metadata_ddbj:ddbj_dra_xml |
sample:300@node:experiment_ddbj@reprocessed-srx |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 113 | — | surveyed |
experiment_ddbj->metadata_ddbj:ddbj_entry_document |
sample:300@node:experiment_ddbj@reprocessed-srx |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
experiment_ddbj->metadata_ebi:ena_browser_xml_document |
sample:300@node:experiment_ddbj@reprocessed-srx |
275 / 300 (downloads 275/275; parses 275/275) | 275 · 0 · 25 | 275 | — | surveyed |
experiment_ddbj->metadata_ebi:ena_filereport_document |
sample:300@node:experiment_ddbj@reprocessed-srx |
275 / 300 (downloads 300/300; parses 275/300) | 300 · 0 · 0 | 300 | — | surveyed |
experiment_ddbj->metadata_ncbi:efetch_sra_xml |
sample:300@node:experiment_ddbj@reprocessed-srx |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
experiment_ddbj->metadata_ncbi:sra_be_runinfo_document |
sample:300@node:experiment_ddbj@reprocessed-srx |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
experiment_ebi->metadata_ddbj:ddbj_dra_xml |
sample:300@node:experiment_ebi@reprocessed-srx |
197 / 300 (downloads 197/197; parses 197/197) | 197 · 0 · 103 | 96 | — | surveyed |
experiment_ebi->metadata_ddbj:ddbj_entry_document |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
experiment_ebi->metadata_ebi:ena_browser_xml_document |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
experiment_ebi->metadata_ebi:ena_filereport_document |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
experiment_ebi->metadata_ncbi:efetch_sra_xml |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
experiment_ebi->metadata_ncbi:sra_be_runinfo_document |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
experiment_ncbi->metadata_ddbj:ddbj_dra_xml |
sample:300@node:experiment_ncbi@reprocessed-srx |
220 / 300 (downloads 220/220; parses 220/220) | 220 · 0 · 80 | 212 | — | surveyed |
experiment_ncbi->metadata_ddbj:ddbj_entry_document |
sample:300@node:experiment_ncbi@reprocessed-srx |
296 / 300 (downloads 296/296; parses 296/296) | 296 · 0 · 4 | 296 | — | surveyed |
experiment_ncbi->metadata_ebi:ena_browser_xml_document |
sample:300@node:experiment_ncbi@reprocessed-srx |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
experiment_ncbi->metadata_ebi:ena_filereport_document |
sample:300@node:experiment_ncbi@reprocessed-srx |
296 / 300 (downloads 300/300; parses 296/300) | 300 · 0 · 0 | 300 | — | surveyed |
experiment_ncbi->metadata_ncbi:efetch_sra_xml |
sample:300@node:experiment_ncbi@reprocessed-srx |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
experiment_ncbi->metadata_ncbi:sra_be_runinfo_document |
sample:300@node:experiment_ncbi@reprocessed-srx |
296 / 300 (downloads 300/300; parses 296/300) | 300 · 0 · 0 | 300 | — | surveyed |
geo_sample->metadata_geo:geo_acc_sample |
sample:300@node:geo_sample@reprocessed-sample |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
geo_series->metadata_geo:geo_acc_series |
sample:300@node:geo_series@reprocessed-gse |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
geo_series->metadata_geo:geo_miniml |
sample:300@node:geo_series@reprocessed-gse |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
geo_series->metadata_geo:geo_series_matrix |
sample:300@node:geo_series@reprocessed-gse |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 386 | — | surveyed |
geo_series->metadata_geo:geo_soft_family |
sample:300@node:geo_series@reprocessed-gse |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
run_ddbj->metadata_ddbj:ddbj_dra_xml |
sample:300@node:run_ddbj@reprocessed-srr |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 101 | — | surveyed |
run_ddbj->metadata_ddbj:ddbj_entry_document |
sample:300@node:run_ddbj@reprocessed-srr |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
run_ddbj->metadata_ebi:ena_browser_xml_document |
sample:300@node:run_ddbj@reprocessed-srr |
279 / 300 (downloads 279/279; parses 279/279) | 279 · 0 · 21 | 279 | — | surveyed |
run_ddbj->metadata_ebi:ena_filereport_document |
sample:300@node:run_ddbj@reprocessed-srr |
279 / 300 (downloads 300/300; parses 279/300) | 300 · 0 · 0 | 300 | — | surveyed |
run_ddbj->metadata_ncbi:efetch_sra_xml |
sample:300@node:run_ddbj@reprocessed-srr |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
run_ddbj->metadata_ncbi:sra_be_runinfo_document |
sample:300@node:run_ddbj@reprocessed-srr |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
run_ebi->metadata_ddbj:ddbj_dra_xml |
sample:300@node:run_ebi@reprocessed-srr |
240 / 300 (downloads 240/240; parses 240/240) | 240 · 0 · 60 | 109 | — | surveyed |
run_ebi->metadata_ddbj:ddbj_entry_document |
sample:300@node:run_ebi@reprocessed-srr |
299 / 300 (downloads 299/299; parses 299/299) | 299 · 0 · 1 | 299 | — | surveyed |
run_ebi->metadata_ebi:ena_browser_xml_document |
sample:300@node:run_ebi@reprocessed-srr |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
run_ebi->metadata_ebi:ena_filereport_document |
sample:300@node:run_ebi@reprocessed-srr |
299 / 300 (downloads 300/300; parses 299/300) | 300 · 0 · 0 | 300 | — | surveyed |
run_ebi->metadata_ncbi:efetch_sra_xml |
sample:300@node:run_ebi@reprocessed-srr |
299 / 300 (downloads 299/299; parses 299/299) | 299 · 1 · 0 | 299 | — | surveyed |
run_ebi->metadata_ncbi:sra_be_runinfo_document |
sample:300@node:run_ebi@reprocessed-srr |
299 / 300 (downloads 300/300; parses 299/300) | 300 · 0 · 0 | 300 | — | surveyed |
run_ncbi->metadata_ddbj:ddbj_dra_xml |
sample:300@node:run_ncbi@reprocessed-srr |
234 / 300 (downloads 234/234; parses 234/234) | 234 · 0 · 66 | 212 | — | surveyed |
run_ncbi->metadata_ddbj:ddbj_entry_document |
sample:300@node:run_ncbi@reprocessed-srr |
299 / 300 (downloads 299/299; parses 299/299) | 299 · 0 · 1 | 299 | — | surveyed |
run_ncbi->metadata_ebi:ena_browser_xml_document |
sample:300@node:run_ncbi@reprocessed-srr |
300 / 300 (downloads 300/300; parses 300/300) | 300 · 0 · 0 | 300 | — | surveyed |
run_ncbi->metadata_ebi:ena_filereport_document |
sample:300@node:run_ncbi@reprocessed-srr |
299 / 300 (downloads 300/300; parses 299/300) | 300 · 0 · 0 | 300 | — | surveyed |
run_ncbi->metadata_ncbi:efetch_sra_xml |
sample:300@node:run_ncbi@reprocessed-srr |
299 / 300 (downloads 299/299; parses 299/299) | 299 · 1 · 0 | 299 | — | surveyed |
run_ncbi->metadata_ncbi:sra_be_runinfo_document |
sample:300@node:run_ncbi@reprocessed-srr |
299 / 300 (downloads 300/300; parses 299/300) | 300 · 0 · 0 | 300 | — | surveyed |
Wave 3: BioProject and ArrayExpress¶
Links between a BioProject and an ArrayExpress study, either way.
What it found:
- Only an EBI project points at its ArrayExpress study. ENA's browser XML named one for
240 of 300 PRJEBs, and
filereport's aliases for 238. Neither did for any PRJNA or PRJDB, as expected, since ArrayExpress submits through ENA. - BioStudies does not know its own projects. Searching BioStudies for a BioProject found the study for 1 of 300 PRJEBs. ENA's cross-reference service found it for 6.
- An ArrayExpress study's own record never names its BioProject. BioStudies' study JSON named one for 0 of 300 studies; ENA's cross-references for 26. The measured route the other way is through the IDF's secondary accession (ArrayExpress to study), which answers for the study. The BioProject is one more hop.
- A BioStudies record outside ArrayExpress names a BioProject for 5 of the 82 a first survey reached.
| Link | Corpus | Usable / queried | Resolved · empty · failed | Distinct | Fit · unfit · ? (read) | Status |
|---|---|---|---|---|---|---|
ae_experiment->bioproject:biostudies_study |
sample:300@node:ae_experiment@arrayexpress-ena |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->ae_experiment:biostudies_search |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->ae_experiment:biostudies_search |
sample:300@node:bioproject/ebi@reprocessed-prj |
1 / 300 | 1 · 299 · 0 | 1 | — | surveyed |
bioproject->ae_experiment:biostudies_search |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
Wave 4: the ArrayExpress sample chain¶
Links into and out of an ArrayExpress sample: a study's SDRF row, addressed as the study
plus its Source Name (E-MTAB-5061:AZ_A1), because such a sample has no accession of its
own.
This population is clustered. It is a seeded draw of 300 from the 9,757 samples the SDRFs of 290 studies listed, so it is 300 samples from fewer than 300 studies. A share here describes samples weighted by how many each study has, not studies.
What it found:
- An SDRF lists its samples for 290 of 300 studies. The 10 failures are SDRFs that are not served.
- An SDRF's fastq URIs are never usable. They named fastqs for 253 of 300 samples, and the usable count is 0:
- none is verifiable, because no SDRF publishes an md5;
- 93 sets did not download, because they point at the decommissioned mirror;
- 84 sets are incomplete for 10x.
This is the mirror pathology measured on a draw
rather than on two studies.
- An SDRF names the sample's ENA records far more often than NCBI's: an ENA run for 200
of 300 samples, an NCBI run for 94; an ENA sample for 200, an NCBI sample for 80; an ENA
experiment for 200, an NCBI one for 100. A GEO sample is named for 100, which are the
E-GEOD imports. A BioSample is named for 181.
- Processed files named by the SDRF were found for 72 samples, and 70 of them downloaded
and were size-checkable.
| Link | Corpus | Usable / queried | Resolved · empty · failed | Distinct | Fit · unfit · ? (read) | Status |
|---|---|---|---|---|---|---|
ae_experiment->ae_sample:biostudies_sdrf |
sample:300@node:ae_experiment@arrayexpress-ena |
290 / 300 | 290 · 0 · 10 | 9757 | — | surveyed |
ae_sample->ae_supplementary:biostudies_sdrf |
sample:300@node:ae_sample@results-of:link:ae_experiment->ae_sample:biostudies_sdrf@sample:300@node:ae_experiment@arrayexpress-ena |
70 / 300 (downloadable 70/72; size-checkable 70/72) | 72 · 221 · 7 | 93 | — | surveyed |
ae_sample->biosample:biostudies_sdrf_comments |
sample:300@node:ae_sample@results-of:link:ae_experiment->ae_sample:biostudies_sdrf@sample:300@node:ae_experiment@arrayexpress-ena |
181 / 300 | 181 · 119 · 0 | 181 | — | surveyed |
ae_sample->experiment_ebi:biostudies_sdrf_comments |
sample:300@node:ae_sample@results-of:link:ae_experiment->ae_sample:biostudies_sdrf@sample:300@node:ae_experiment@arrayexpress-ena |
200 / 300 | 200 · 100 · 0 | 212 | — | surveyed |
ae_sample->experiment_ncbi:biostudies_sdrf_comments |
sample:300@node:ae_sample@results-of:link:ae_experiment->ae_sample:biostudies_sdrf@sample:300@node:ae_experiment@arrayexpress-ena |
100 / 300 | 100 · 200 · 0 | 100 | — | surveyed |
ae_sample->fastq:biostudies_sdrf_fastq |
sample:300@node:ae_sample@results-of:link:ae_experiment->ae_sample:biostudies_sdrf@sample:300@node:ae_experiment@arrayexpress-ena |
0 / 300 (complete 169/253; downloadable 160/253; verifiable 0/253) | 253 · 47 · 0 | 524 | — | surveyed-none |
ae_sample->geo_sample:biostudies_sdrf_comments |
sample:300@node:ae_sample@results-of:link:ae_experiment->ae_sample:biostudies_sdrf@sample:300@node:ae_experiment@arrayexpress-ena |
100 / 300 | 100 · 200 · 0 | 100 | — | surveyed |
ae_sample->metadata_ae:biostudies_sdrf |
sample:300@node:ae_sample@results-of:link:ae_experiment->ae_sample:biostudies_sdrf@sample:300@node:ae_experiment@arrayexpress-ena |
293 / 300 (downloads 293/293; parses 293/293) | 293 · 0 · 7 | 92 | — | surveyed |
ae_sample->run_ebi:biostudies_sdrf_comments |
sample:300@node:ae_sample@results-of:link:ae_experiment->ae_sample:biostudies_sdrf@sample:300@node:ae_experiment@arrayexpress-ena |
200 / 300 | 200 · 100 · 0 | 232 | — | surveyed |
ae_sample->run_ncbi:biostudies_sdrf_comments |
sample:300@node:ae_sample@results-of:link:ae_experiment->ae_sample:biostudies_sdrf@sample:300@node:ae_experiment@arrayexpress-ena |
94 / 300 | 94 · 206 · 0 | 118 | — | surveyed |
ae_sample->sample_ebi:biostudies_sdrf_comments |
sample:300@node:ae_sample@results-of:link:ae_experiment->ae_sample:biostudies_sdrf@sample:300@node:ae_experiment@arrayexpress-ena |
200 / 300 | 200 · 100 · 0 | 200 | — | surveyed |
ae_sample->sample_ncbi:biostudies_sdrf_comments |
sample:300@node:ae_sample@results-of:link:ae_experiment->ae_sample:biostudies_sdrf@sample:300@node:ae_experiment@arrayexpress-ena |
80 / 300 | 80 · 220 · 0 | 80 | — | surveyed |
Wave 5: read files from a run¶
Links from a run into its read files that no route measures. A file set is usable only if it passes all three checks:
- downloadable: a HEAD answers at the size the archive published;
- verifiable: the archive publishes an md5 and a size;
- complete for 10x: both the barcode read and the cDNA read are there.
These checks were made on one run's set, chosen by seed. What the first reads of those
files hold is a separate survey, the content survey,
over the same 300 runs per run node. Its verdicts are the table's Fit · unfit · ?
column: runs whose listed files were read and found fit, proven unfit, or left undetermined
under rule fit-2.
What it found:
- NCBI's SRA XML is a complete file route for both object types. It lists the Normalized object with an md5, and the object downloads and is complete for 289, 292 and 285 of 300 runs from DDBJ, NCBI and EBI. For the Lite object the figures are 286, 285 and
- The incomplete ones (4 to 9 per archive) are runs whose SRA object lost the barcode read, as ERR4265292's did.
- Two sources download and can never be verified. sra-db-be's
download_pathnames the Lite object for 291 to 297 runs and publishes no md5. DDBJ's own fastqs download for 300 of 300 DRRs and are complete for 298, and publish no md5 either. Both are usable in practice and fail the rule that a download must be checkable, so both count 0 here. - DDBJ's mirror of other archives' SRA objects is half there. Its search entry names an object for 299 of 300 SRRs and ERRs, and 141 and 162 of those did not download. For DDBJ's own runs all 300 did.
- SDL's originals are listed and cold. SDL named the submitter's fastqs for 298 of 300 SRRs, and none downloaded: they are in cold storage, named with an empty link. For ERRs it named fastqs for 232 (28 downloadable), CRAMs for 54 (3) and BAMs for 4 (0).
- ENA lists a submitted BAM for 79 of 300 ERRs, and every one is usable. No SRR or DRR has one.
- Read, the copies mostly agree, and the mirror does not. NCBI's SRA XML objects are fit for 238 of 299 NCBI runs, 226 of 299 EBI runs and 254 of 300 DDBJ runs, as the Normalized object SDL names is. DDBJ's mirror of NCBI objects is fit for 117: the rest are mostly objects that do not exist. ENA's submitted BAMs are fit for 53 of 79, and 22 are libraries that are not gene expression or calls left ambiguous.
| Link | Corpus | Usable / queried | Resolved · empty · failed | Distinct | Fit · unfit · ? (read) | Status |
|---|---|---|---|---|---|---|
run_ddbj->bam:ena_filereport_bam |
sample:300@node:run_ddbj@reprocessed-srr |
0 / 300 | 0 · 296 · 4 | 0 | 0 · 0 · 0 | surveyed-none |
run_ddbj->bam:sdl_original |
sample:300@node:run_ddbj@reprocessed-srr |
0 / 300 | 0 · 300 · 0 | 0 | 0 · 0 · 0 | surveyed-none |
run_ddbj->cram:sdl_original |
sample:300@node:run_ddbj@reprocessed-srr |
0 / 300 | 0 · 300 · 0 | 0 | 0 · 0 · 0 | surveyed-none |
run_ddbj->fastq:ddbj_entry_fastq |
sample:300@node:run_ddbj@reprocessed-srr |
0 / 300 (complete 298/300; downloadable 300/300; verifiable 0/300) | 300 · 0 · 0 | 603 | 265 · 4 · 31 | surveyed-none |
run_ddbj->fastq:sdl_original |
sample:300@node:run_ddbj@reprocessed-srr |
0 / 300 | 0 · 300 · 0 | 0 | 0 · 0 · 0 | surveyed-none |
run_ddbj->sra_lite:efetch_sra_files |
sample:300@node:run_ddbj@reprocessed-srr |
286 / 300 (complete 286/297; downloadable 297/297; verifiable 297/297) | 297 · 3 · 0 | 478 | 262 · 4 · 31 | surveyed |
run_ddbj->sra_lite:sdl_lite |
sample:300@node:run_ddbj@reprocessed-srr |
286 / 300 (complete 286/297; downloadable 297/297; verifiable 297/297) | 297 · 3 · 0 | 297 | 262 · 4 · 31 | surveyed |
run_ddbj->sra_lite:sra_be_runinfo_download |
sample:300@node:run_ddbj@reprocessed-srr |
0 / 300 (complete 286/297; downloadable 297/297; verifiable 0/297) | 297 · 3 · 0 | 297 | 262 · 4 · 31 | surveyed-none |
run_ddbj->sra_normalized:ddbj_entry_sra |
sample:300@node:run_ddbj@reprocessed-srr |
0 / 300 (complete 289/300; downloadable 300/300; verifiable 0/300) | 300 · 0 · 0 | 300 | 265 · 4 · 31 | surveyed-none |
run_ddbj->sra_normalized:efetch_sra_files |
sample:300@node:run_ddbj@reprocessed-srr |
289 / 300 (complete 289/300; downloadable 300/300; verifiable 300/300) | 300 · 0 · 0 | 496 | 265 · 4 · 31 | surveyed |
run_ebi->bam:ena_filereport_bam |
sample:300@node:run_ebi@reprocessed-srr |
79 / 300 (complete 79/79; downloadable 79/79; verifiable 79/79) | 79 · 221 · 0 | 79 | 53 · 4 · 22 | surveyed |
run_ebi->bam:sdl_original |
sample:300@node:run_ebi@reprocessed-srr |
0 / 300 (complete 4/4; downloadable 0/4; verifiable 4/4) | 4 · 296 · 0 | 4 | 0 · 0 · 4 | surveyed-none |
run_ebi->cram:sdl_original |
sample:300@node:run_ebi@reprocessed-srr |
3 / 300 (complete 54/54; downloadable 3/54; verifiable 54/54) | 54 · 246 · 0 | 54 | 2 · 0 · 52 | surveyed |
run_ebi->fastq:sdl_original |
sample:300@node:run_ebi@reprocessed-srr |
27 / 300 (complete 219/232; downloadable 28/232; verifiable 232/232) | 232 · 68 · 0 | 640 | 22 · 0 · 210 | surveyed |
run_ebi->sra_lite:efetch_sra_files |
sample:300@node:run_ebi@reprocessed-srr |
284 / 300 (complete 284/298; downloadable 298/298; verifiable 298/298) | 298 · 2 · 0 | 1402 | 234 · 2 · 61 | surveyed |
run_ebi->sra_lite:sdl_lite |
sample:300@node:run_ebi@reprocessed-srr |
283 / 300 (complete 283/298; downloadable 298/298; verifiable 298/298) | 298 · 2 · 0 | 298 | 234 · 2 · 62 | surveyed |
run_ebi->sra_lite:sra_be_runinfo_download |
sample:300@node:run_ebi@reprocessed-srr |
0 / 300 (complete 283/297; downloadable 297/297; verifiable 0/297) | 297 · 3 · 0 | 297 | 234 · 2 · 61 | surveyed-none |
run_ebi->sra_normalized:ddbj_entry_sra |
sample:300@node:run_ebi@reprocessed-srr |
0 / 300 (complete 285/299; downloadable 137/299; verifiable 0/299) | 299 · 0 · 1 | 299 | 98 · 1 · 200 | surveyed-none |
run_ebi->sra_normalized:efetch_sra_files |
sample:300@node:run_ebi@reprocessed-srr |
285 / 300 (complete 285/299; downloadable 299/299; verifiable 299/299) | 299 · 1 · 0 | 1406 | 234 · 2 · 63 | surveyed |
run_ncbi->bam:ena_filereport_bam |
sample:300@node:run_ncbi@reprocessed-srr |
0 / 300 | 0 · 300 · 0 | 0 | 0 · 0 · 0 | surveyed-none |
run_ncbi->bam:sdl_original |
sample:300@node:run_ncbi@reprocessed-srr |
0 / 300 | 0 · 300 · 0 | 0 | 0 · 0 · 0 | surveyed-none |
run_ncbi->cram:sdl_original |
sample:300@node:run_ncbi@reprocessed-srr |
0 / 300 | 0 · 300 · 0 | 0 | 0 · 0 · 0 | surveyed-none |
run_ncbi->fastq:sdl_original |
sample:300@node:run_ncbi@reprocessed-srr |
0 / 300 (complete 289/298; downloadable 0/298; verifiable 298/298) | 298 · 2 · 0 | 905 | 0 · 0 · 298 | surveyed-none |
run_ncbi->sra_lite:efetch_sra_files |
sample:300@node:run_ncbi@reprocessed-srr |
285 / 300 (complete 285/291; downloadable 291/291; verifiable 291/291) | 291 · 9 · 0 | 2128 | 241 · 6 · 44 | surveyed |
run_ncbi->sra_lite:sdl_lite |
sample:300@node:run_ncbi@reprocessed-srr |
285 / 300 (complete 285/292; downloadable 292/292; verifiable 292/292) | 292 · 8 · 0 | 292 | 242 · 6 · 44 | surveyed |
run_ncbi->sra_lite:sra_be_runinfo_download |
sample:300@node:run_ncbi@reprocessed-srr |
0 / 300 (complete 285/291; downloadable 291/291; verifiable 0/291) | 291 · 9 · 0 | 291 | 241 · 6 · 44 | surveyed-none |
run_ncbi->sra_normalized:ddbj_entry_sra |
sample:300@node:run_ncbi@reprocessed-srr |
0 / 300 (complete 292/299; downloadable 158/299; verifiable 0/299) | 299 · 0 · 1 | 299 | 124 · 5 · 170 | surveyed-none |
run_ncbi->sra_normalized:efetch_sra_files |
sample:300@node:run_ncbi@reprocessed-srr |
292 / 300 (complete 292/299; downloadable 299/299; verifiable 299/299) | 299 · 1 · 0 | 2150 | 245 · 7 · 47 | surveyed |
Wave 6: everything else¶
The rest: NCBI's ELinks and the gds and SRA summaries, DDBJ's dblink, ENA's search and cross-reference services, BioStudies records, submissions, and read files reached from a record other than a run. 667 links were surveyed, as 991 link splits.
What it found:
- The two NCBI runinfo-style answers reach everything SRA links. sra-db-be's runinfo and ESummary on SRA have 93 links each, and every one of them is usable somewhere. Together they are the broadest single requests in the catalogue.
- ENA publishes no SRA object.
filereport'ssra_ftpcolumn was empty for every record of every node it was asked about: 28 links, 0 of 9,386 queries. The SRA objects are NCBI's, reached through SDL and the SRA XML (wave 5). - None of these projects is an umbrella. ELink's umbrella-to-component link answered for
0 of 737 BioProjects, and component-to-umbrella for 76. The one umbrella the probe used,
PRJNA988804, was chosen because it is one. - ArrayExpress imports of GEO are historical. BioStudies found an
E-GEODstudy for 0 of 300 reprocessed GEO series. ArrayExpress stopped importing GEO before most of them were submitted. - DDBJ's dblink answers for 77 of the 122 links it declares. It is the one service that links a DDBJ record to everything at once. Of the 45 that never answered, 20 lead into an analysis and 7 into a submission, which no record here reaches by any route. 6 lead into a BioProject and 6 into a GEO series: dblink does not carry those relations for these records, though other services do.
- A record's read files from ENA are per run.
filereport's fastq column reached files from 14 links (every record type) for 3,250 of 4,693 queries. The submitted-files column was usable from 19 of 42 links, for 1,572 of 14,079 queries. A BAM came from 6 of 14 links, for EBI records only. - No EBI analysis was reachable from any record, so all 22
filereportanalysis links are surveyed-none, as their wave-1 neighbours were. - SDL from a record other than a run answered from 25 of 44 links where its gate allowed it at all. SDL on a project or an EBI study failed its gate and was never drawn.
| Link | Corpus | Usable / queried | Resolved · empty · failed | Distinct | Fit · unfit · ? (read) | Status |
|---|---|---|---|---|---|---|
ae_experiment->ae_supplementary:biostudies_files |
sample:300@node:ae_experiment@arrayexpress-ena |
131 / 300 (downloadable 131/142; size-checkable 131/142) | 142 · 158 · 0 | 2943 | — | surveyed |
ae_experiment->ae_supplementary:biostudies_sdrf |
sample:300@node:ae_experiment@arrayexpress-ena |
131 / 300 (downloadable 131/137; size-checkable 136/137) | 137 · 153 · 10 | 2908 | — | surveyed |
ae_experiment->study_ebi:biostudies_study |
sample:300@node:ae_experiment@arrayexpress-ena |
136 / 300 | 136 · 164 · 0 | 136 | — | surveyed |
ae_experiment->study_ebi:ena_xref_source |
sample:300@node:ae_experiment@arrayexpress-ena |
26 / 300 | 26 · 274 · 0 | 26 | — | surveyed |
ae_experiment->study_ncbi:biostudies_study |
sample:300@node:ae_experiment@arrayexpress-ena |
164 / 300 | 164 · 136 · 0 | 164 | — | surveyed |
ae_experiment->study_ncbi:ena_xref_source |
sample:300@node:ae_experiment@arrayexpress-ena |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->analysis_ddbj:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
1 / 137 | 1 · 136 · 0 | 1 | — | surveyed |
bioproject->analysis_ddbj:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->analysis_ddbj:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->analysis_ebi:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->analysis_ebi:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->analysis_ebi:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->analysis_ebi:ena_filereport_analysis |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->analysis_ebi:ena_filereport_analysis |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->analysis_ebi:ena_filereport_analysis |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->analysis_ebi:ena_links |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->analysis_ebi:ena_links |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->analysis_ebi:ena_links |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->analysis_ncbi:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->analysis_ncbi:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->analysis_ncbi:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->bioproject:elink_bioproject_bioproject_u2d |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->bioproject:elink_bioproject_bioproject_u2d |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->bioproject:elink_bioproject_bioproject_u2d |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->experiment_ddbj:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 1826 | — | surveyed |
bioproject->experiment_ddbj:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ddbj:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ddbj:elink_bioproject_sra_all |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 1826 | — | surveyed |
bioproject->experiment_ddbj:elink_bioproject_sra_all |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ddbj:elink_bioproject_sra_all |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ddbj:ena_links |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 1826 | — | surveyed |
bioproject->experiment_ddbj:ena_links |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ddbj:ena_links |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ddbj:esummary_sra |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 1826 | — | surveyed |
bioproject->experiment_ddbj:esummary_sra |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ddbj:esummary_sra |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ddbj:sra_be_runinfo |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 1826 | — | surveyed |
bioproject->experiment_ddbj:sra_be_runinfo |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ddbj:sra_be_runinfo |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ebi:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->experiment_ebi:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
297 / 300 | 297 · 3 · 0 | 124698 | — | surveyed |
bioproject->experiment_ebi:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ebi:elink_bioproject_sra_all |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->experiment_ebi:elink_bioproject_sra_all |
sample:300@node:bioproject/ebi@reprocessed-prj |
297 / 300 | 297 · 3 · 0 | 124698 | — | surveyed |
bioproject->experiment_ebi:elink_bioproject_sra_all |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ebi:ena_filereport_analysis |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->experiment_ebi:ena_filereport_analysis |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->experiment_ebi:ena_filereport_analysis |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->experiment_ebi:ena_links |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->experiment_ebi:ena_links |
sample:300@node:bioproject/ebi@reprocessed-prj |
298 / 300 | 298 · 2 · 0 | 123461 | — | surveyed |
bioproject->experiment_ebi:ena_links |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ebi:esummary_sra |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->experiment_ebi:esummary_sra |
sample:300@node:bioproject/ebi@reprocessed-prj |
298 / 300 | 298 · 2 · 0 | 124718 | — | surveyed |
bioproject->experiment_ebi:esummary_sra |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ebi:sra_be_runinfo |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->experiment_ebi:sra_be_runinfo |
sample:300@node:bioproject/ebi@reprocessed-prj |
297 / 300 | 297 · 3 · 0 | 113016 | — | surveyed |
bioproject->experiment_ebi:sra_be_runinfo |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ncbi:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->experiment_ncbi:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ncbi:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 6543 | — | surveyed |
bioproject->experiment_ncbi:elink_bioproject_sra_all |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->experiment_ncbi:elink_bioproject_sra_all |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ncbi:elink_bioproject_sra_all |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 6544 | — | surveyed |
bioproject->experiment_ncbi:ena_links |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->experiment_ncbi:ena_links |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ncbi:ena_links |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 6543 | — | surveyed |
bioproject->experiment_ncbi:esummary_sra |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->experiment_ncbi:esummary_sra |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ncbi:esummary_sra |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 6543 | — | surveyed |
bioproject->experiment_ncbi:sra_be_runinfo |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->experiment_ncbi:sra_be_runinfo |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->experiment_ncbi:sra_be_runinfo |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 6473 | — | surveyed |
bioproject->geo_series:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->geo_series:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->geo_series:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
269 / 300 | 269 · 31 · 0 | 269 | — | surveyed |
bioproject->geo_series:ena_browser_xml |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->geo_series:ena_browser_xml |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->geo_series:ena_browser_xml |
sample:300@node:bioproject/ncbi@reprocessed-prj |
269 / 300 | 269 · 31 · 0 | 269 | — | surveyed |
bioproject->geo_series:ena_filereport_aliases |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->geo_series:ena_filereport_aliases |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->geo_series:ena_filereport_aliases |
sample:300@node:bioproject/ncbi@reprocessed-prj |
268 / 300 | 268 · 32 · 0 | 268 | — | surveyed |
bioproject->geo_series:ena_search_study |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->geo_series:ena_search_study |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->geo_series:ena_search_study |
sample:300@node:bioproject/ncbi@reprocessed-prj |
269 / 300 | 269 · 31 · 0 | 269 | — | surveyed |
bioproject->geo_series:ena_xref_target |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->geo_series:ena_xref_target |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->geo_series:ena_xref_target |
sample:300@node:bioproject/ncbi@reprocessed-prj |
269 / 300 | 269 · 31 · 0 | 269 | — | surveyed |
bioproject->run_ddbj:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 2312 | — | surveyed |
bioproject->run_ddbj:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->run_ddbj:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->run_ddbj:ena_links |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 2308 | — | surveyed |
bioproject->run_ddbj:ena_links |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->run_ddbj:ena_links |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->run_ddbj:esummary_sra |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 2308 | — | surveyed |
bioproject->run_ddbj:esummary_sra |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->run_ddbj:esummary_sra |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->run_ddbj:sra_be_runinfo |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 2308 | — | surveyed |
bioproject->run_ddbj:sra_be_runinfo |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->run_ddbj:sra_be_runinfo |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->run_ebi:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->run_ebi:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
297 / 300 | 297 · 3 · 0 | 118356 | — | surveyed |
bioproject->run_ebi:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->run_ebi:ena_filereport_analysis |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->run_ebi:ena_filereport_analysis |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->run_ebi:ena_filereport_analysis |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->run_ebi:ena_links |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->run_ebi:ena_links |
sample:300@node:bioproject/ebi@reprocessed-prj |
298 / 300 | 298 · 2 · 0 | 117115 | — | surveyed |
bioproject->run_ebi:ena_links |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->run_ebi:esummary_sra |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->run_ebi:esummary_sra |
sample:300@node:bioproject/ebi@reprocessed-prj |
298 / 300 | 298 · 2 · 0 | 118372 | — | surveyed |
bioproject->run_ebi:esummary_sra |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->run_ebi:sra_be_runinfo |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->run_ebi:sra_be_runinfo |
sample:300@node:bioproject/ebi@reprocessed-prj |
297 / 300 | 297 · 3 · 0 | 118352 | — | surveyed |
bioproject->run_ebi:sra_be_runinfo |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->run_ncbi:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->run_ncbi:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->run_ncbi:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 11205 | — | surveyed |
bioproject->run_ncbi:ena_links |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->run_ncbi:ena_links |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->run_ncbi:ena_links |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 11205 | — | surveyed |
bioproject->run_ncbi:esummary_sra |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->run_ncbi:esummary_sra |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->run_ncbi:esummary_sra |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 10869 | — | surveyed |
bioproject->run_ncbi:sra_be_runinfo |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->run_ncbi:sra_be_runinfo |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->run_ncbi:sra_be_runinfo |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 11205 | — | surveyed |
bioproject->sra_lite:ena_filereport_sra |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->sra_lite:ena_filereport_sra |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->sra_lite:ena_filereport_sra |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->sra_lite:sra_be_runinfo_download |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 (complete 120/135; downloadable 135/135; verifiable 0/135) | 135 · 2 · 0 | 2250 | — | surveyed-none |
bioproject->sra_lite:sra_be_runinfo_download |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 (complete 276/295; downloadable 295/295; verifiable 0/295) | 295 · 5 · 0 | 47777 | — | surveyed-none |
bioproject->sra_lite:sra_be_runinfo_download |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 (complete 288/297; downloadable 297/297; verifiable 0/297) | 297 · 3 · 0 | 11111 | — | surveyed-none |
bioproject->sra_normalized:ena_filereport_sra |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->sra_normalized:ena_filereport_sra |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->sra_normalized:ena_filereport_sra |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->study_ddbj:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 137 | — | surveyed |
bioproject->study_ddbj:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->study_ddbj:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->study_ddbj:ena_search_study |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 137 | — | surveyed |
bioproject->study_ddbj:ena_search_study |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->study_ddbj:ena_search_study |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->study_ddbj:esummary_sra |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 137 | — | surveyed |
bioproject->study_ddbj:esummary_sra |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->study_ddbj:esummary_sra |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->study_ddbj:sra_be_runinfo |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 137 | — | surveyed |
bioproject->study_ddbj:sra_be_runinfo |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->study_ddbj:sra_be_runinfo |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->study_ebi:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->study_ebi:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
297 / 300 | 297 · 3 · 0 | 297 | — | surveyed |
bioproject->study_ebi:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->study_ebi:ena_filereport_analysis |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->study_ebi:ena_filereport_analysis |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->study_ebi:ena_filereport_analysis |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->study_ebi:ena_search_study |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->study_ebi:ena_search_study |
sample:300@node:bioproject/ebi@reprocessed-prj |
298 / 300 | 298 · 2 · 0 | 298 | — | surveyed |
bioproject->study_ebi:ena_search_study |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->study_ebi:esummary_sra |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->study_ebi:esummary_sra |
sample:300@node:bioproject/ebi@reprocessed-prj |
298 / 300 | 298 · 2 · 0 | 306 | — | surveyed |
bioproject->study_ebi:esummary_sra |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->study_ebi:sra_be_runinfo |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->study_ebi:sra_be_runinfo |
sample:300@node:bioproject/ebi@reprocessed-prj |
297 / 300 | 297 · 3 · 0 | 297 | — | surveyed |
bioproject->study_ebi:sra_be_runinfo |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->study_ncbi:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
1 / 137 | 1 · 136 · 0 | 1 | — | surveyed |
bioproject->study_ncbi:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->study_ncbi:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 300 | — | surveyed |
bioproject->study_ncbi:ena_search_study |
node:bioproject/ddbj@reprocessed-prj |
1 / 137 | 1 · 136 · 0 | 1 | — | surveyed |
bioproject->study_ncbi:ena_search_study |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->study_ncbi:ena_search_study |
sample:300@node:bioproject/ncbi@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 300 | — | surveyed |
bioproject->study_ncbi:esummary_sra |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->study_ncbi:esummary_sra |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->study_ncbi:esummary_sra |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 299 | — | surveyed |
bioproject->study_ncbi:sra_be_runinfo |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->study_ncbi:sra_be_runinfo |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->study_ncbi:sra_be_runinfo |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 299 | — | surveyed |
bioproject->submission_ddbj:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->submission_ddbj:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->submission_ddbj:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->submission_ddbj:esummary_sra |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 192 | — | surveyed |
bioproject->submission_ddbj:esummary_sra |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->submission_ddbj:esummary_sra |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->submission_ddbj:sra_be_runinfo |
node:bioproject/ddbj@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 192 | — | surveyed |
bioproject->submission_ddbj:sra_be_runinfo |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->submission_ddbj:sra_be_runinfo |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->submission_ebi:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->submission_ebi:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->submission_ebi:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->submission_ebi:ena_filereport_analysis |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->submission_ebi:ena_filereport_analysis |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->submission_ebi:ena_filereport_analysis |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->submission_ebi:esummary_sra |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->submission_ebi:esummary_sra |
sample:300@node:bioproject/ebi@reprocessed-prj |
298 / 300 | 298 · 2 · 0 | 675 | — | surveyed |
bioproject->submission_ebi:esummary_sra |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->submission_ebi:sra_be_runinfo |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->submission_ebi:sra_be_runinfo |
sample:300@node:bioproject/ebi@reprocessed-prj |
297 / 300 | 297 · 3 · 0 | 677 | — | surveyed |
bioproject->submission_ebi:sra_be_runinfo |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->submission_ncbi:ddbj_dblink |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
bioproject->submission_ncbi:ddbj_dblink |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->submission_ncbi:ddbj_dblink |
sample:300@node:bioproject/ncbi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
bioproject->submission_ncbi:esummary_sra |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->submission_ncbi:esummary_sra |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->submission_ncbi:esummary_sra |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 355 | — | surveyed |
bioproject->submission_ncbi:sra_be_runinfo |
node:bioproject/ddbj@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed |
bioproject->submission_ncbi:sra_be_runinfo |
sample:300@node:bioproject/ebi@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
bioproject->submission_ncbi:sra_be_runinfo |
sample:300@node:bioproject/ncbi@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 352 | — | surveyed |
biosample->analysis_ddbj:ddbj_dblink |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->analysis_ddbj:ddbj_dblink |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->analysis_ddbj:ddbj_dblink |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->analysis_ebi:ddbj_dblink |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->analysis_ebi:ddbj_dblink |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->analysis_ebi:ddbj_dblink |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->analysis_ebi:ena_filereport_analysis |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->analysis_ebi:ena_filereport_analysis |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->analysis_ebi:ena_filereport_analysis |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->analysis_ebi:ena_links |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->analysis_ebi:ena_links |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->analysis_ebi:ena_links |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->analysis_ncbi:ddbj_dblink |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->analysis_ncbi:ddbj_dblink |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->analysis_ncbi:ddbj_dblink |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->bioproject:ena_filereport_analysis |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->bioproject:ena_filereport_analysis |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->bioproject:ena_filereport_analysis |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->experiment_ddbj:ena_links |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->experiment_ddbj:ena_links |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->experiment_ddbj:ena_links |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->experiment_ebi:ena_filereport_analysis |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->experiment_ebi:ena_filereport_analysis |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->experiment_ebi:ena_filereport_analysis |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->experiment_ebi:ena_links |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->experiment_ebi:ena_links |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
110 / 300 | 110 · 190 · 0 | 113 | — | surveyed |
biosample->experiment_ebi:ena_links |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->experiment_ncbi:ena_links |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->experiment_ncbi:ena_links |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->experiment_ncbi:ena_links |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
62 / 300 | 62 · 238 · 0 | 62 | — | surveyed |
biosample->geo_series:ddbj_dblink |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->geo_series:ddbj_dblink |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->geo_series:ddbj_dblink |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->run_ddbj:ddbj_dblink |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 399 | — | surveyed |
biosample->run_ddbj:ddbj_dblink |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ddbj:ddbj_dblink |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ddbj:ena_links |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->run_ddbj:ena_links |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->run_ddbj:ena_links |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->run_ddbj:esummary_sra |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 398 | — | surveyed |
biosample->run_ddbj:esummary_sra |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ddbj:esummary_sra |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ddbj:sra_be_runinfo |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 398 | — | surveyed |
biosample->run_ddbj:sra_be_runinfo |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ddbj:sra_be_runinfo |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ebi:ddbj_dblink |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ebi:ddbj_dblink |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 343 | — | surveyed |
biosample->run_ebi:ddbj_dblink |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ebi:ena_filereport_analysis |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->run_ebi:ena_filereport_analysis |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->run_ebi:ena_filereport_analysis |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->run_ebi:ena_links |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ebi:ena_links |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
110 / 300 | 110 · 190 · 0 | 121 | — | surveyed |
biosample->run_ebi:ena_links |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ebi:esummary_sra |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ebi:esummary_sra |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 343 | — | surveyed |
biosample->run_ebi:esummary_sra |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ebi:sra_be_runinfo |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ebi:sra_be_runinfo |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 343 | — | surveyed |
biosample->run_ebi:sra_be_runinfo |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ncbi:ddbj_dblink |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ncbi:ddbj_dblink |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ncbi:ddbj_dblink |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 510 | — | surveyed |
biosample->run_ncbi:ena_links |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ncbi:ena_links |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ncbi:ena_links |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
62 / 300 | 62 · 238 · 0 | 96 | — | surveyed |
biosample->run_ncbi:esummary_sra |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ncbi:esummary_sra |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ncbi:esummary_sra |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 510 | — | surveyed |
biosample->run_ncbi:sra_be_runinfo |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ncbi:sra_be_runinfo |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->run_ncbi:sra_be_runinfo |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 508 | — | surveyed |
biosample->sra_lite:ena_filereport_sra |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->sra_lite:ena_filereport_sra |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->sra_lite:ena_filereport_sra |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->sra_lite:sra_be_runinfo_download |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 (complete 258/295; downloadable 295/295; verifiable 0/295) | 295 · 5 · 0 | 390 | — | surveyed-none |
biosample->sra_lite:sra_be_runinfo_download |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 (complete 277/290; downloadable 290/290; verifiable 0/290) | 290 · 10 · 0 | 333 | — | surveyed-none |
biosample->sra_lite:sra_be_runinfo_download |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 (complete 251/296; downloadable 296/296; verifiable 0/296) | 296 · 4 · 0 | 499 | — | surveyed-none |
biosample->sra_normalized:ena_filereport_sra |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->sra_normalized:ena_filereport_sra |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->sra_normalized:ena_filereport_sra |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->study_ddbj:ddbj_dblink |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->study_ddbj:ddbj_dblink |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->study_ddbj:ddbj_dblink |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->study_ebi:ddbj_dblink |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->study_ebi:ddbj_dblink |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->study_ebi:ddbj_dblink |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->study_ebi:ena_filereport_analysis |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->study_ebi:ena_filereport_analysis |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->study_ebi:ena_filereport_analysis |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->study_ncbi:ddbj_dblink |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->study_ncbi:ddbj_dblink |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->study_ncbi:ddbj_dblink |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ddbj:ddbj_dblink |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ddbj:ddbj_dblink |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ddbj:ddbj_dblink |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ddbj:ena_search_sample |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ddbj:ena_search_sample |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ddbj:ena_search_sample |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ddbj:esummary_sra |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 100 | — | surveyed |
biosample->submission_ddbj:esummary_sra |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ddbj:esummary_sra |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ddbj:sra_be_runinfo |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 100 | — | surveyed |
biosample->submission_ddbj:sra_be_runinfo |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ddbj:sra_be_runinfo |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ebi:ddbj_dblink |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ebi:ddbj_dblink |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ebi:ddbj_dblink |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ebi:ena_filereport_analysis |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ebi:ena_filereport_analysis |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ebi:ena_filereport_analysis |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ebi:ena_search_sample |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ebi:ena_search_sample |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ebi:ena_search_sample |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ebi:esummary_sra |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ebi:esummary_sra |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 108 | — | surveyed |
biosample->submission_ebi:esummary_sra |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ebi:sra_be_runinfo |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ebi:sra_be_runinfo |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 108 | — | surveyed |
biosample->submission_ebi:sra_be_runinfo |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ncbi:ddbj_dblink |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ncbi:ddbj_dblink |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ncbi:ddbj_dblink |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ncbi:ena_search_sample |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ncbi:ena_search_sample |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ncbi:ena_search_sample |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
biosample->submission_ncbi:esummary_sra |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ncbi:esummary_sra |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ncbi:esummary_sra |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 228 | — | surveyed |
biosample->submission_ncbi:sra_be_runinfo |
sample:300@node:biosample/ddbj@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ncbi:sra_be_runinfo |
sample:300@node:biosample/ebi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed |
biosample->submission_ncbi:sra_be_runinfo |
sample:300@node:biosample/ncbi@results-of:bioproject->biosample:ena_filereport@reprocessed-prj |
299 / 300 | 299 · 1 · 0 | 227 | — | surveyed |
experiment_ddbj->analysis_ddbj:ddbj_dblink |
sample:300@node:experiment_ddbj@reprocessed-srx |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
experiment_ddbj->run_ddbj:ddbj_dblink |
sample:300@node:experiment_ddbj@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 401 | — | surveyed |
experiment_ddbj->run_ddbj:esummary_sra |
sample:300@node:experiment_ddbj@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 400 | — | surveyed |
experiment_ddbj->run_ddbj:sra_be_runinfo |
sample:300@node:experiment_ddbj@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 400 | — | surveyed |
experiment_ddbj->sra_lite:ena_filereport_sra |
sample:300@node:experiment_ddbj@reprocessed-srx |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
experiment_ddbj->sra_lite:sra_be_runinfo_download |
sample:300@node:experiment_ddbj@reprocessed-srx |
0 / 300 (complete 283/298; downloadable 298/298; verifiable 0/298) | 298 · 2 · 0 | 394 | — | surveyed-none |
experiment_ddbj->sra_normalized:ena_filereport_sra |
sample:300@node:experiment_ddbj@reprocessed-srx |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
experiment_ddbj->submission_ddbj:ddbj_dblink |
sample:300@node:experiment_ddbj@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 113 | — | surveyed |
experiment_ddbj->submission_ddbj:esummary_sra |
sample:300@node:experiment_ddbj@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 113 | — | surveyed |
experiment_ddbj->submission_ddbj:sra_be_runinfo |
sample:300@node:experiment_ddbj@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 113 | — | surveyed |
experiment_ebi->analysis_ebi:ddbj_dblink |
sample:300@node:experiment_ebi@reprocessed-srx |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
experiment_ebi->run_ebi:ddbj_dblink |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 558 | — | surveyed |
experiment_ebi->run_ebi:esummary_sra |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 558 | — | surveyed |
experiment_ebi->run_ebi:sra_be_runinfo |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 558 | — | surveyed |
experiment_ebi->sra_lite:ena_filereport_sra |
sample:300@node:experiment_ebi@reprocessed-srx |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
experiment_ebi->sra_lite:sra_be_runinfo_download |
sample:300@node:experiment_ebi@reprocessed-srx |
0 / 300 (complete 291/299; downloadable 299/299; verifiable 0/299) | 299 · 1 · 0 | 553 | — | surveyed-none |
experiment_ebi->sra_normalized:ena_filereport_sra |
sample:300@node:experiment_ebi@reprocessed-srx |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
experiment_ebi->submission_ebi:ddbj_dblink |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 153 | — | surveyed |
experiment_ebi->submission_ebi:esummary_sra |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 153 | — | surveyed |
experiment_ebi->submission_ebi:sra_be_runinfo |
sample:300@node:experiment_ebi@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 153 | — | surveyed |
experiment_ncbi->analysis_ncbi:ddbj_dblink |
sample:300@node:experiment_ncbi@reprocessed-srx |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
experiment_ncbi->geo_series:ddbj_dblink |
sample:300@node:experiment_ncbi@reprocessed-srx |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
experiment_ncbi->run_ncbi:ddbj_dblink |
sample:300@node:experiment_ncbi@reprocessed-srx |
296 / 300 | 296 · 4 · 0 | 691 | — | surveyed |
experiment_ncbi->run_ncbi:esummary_sra |
sample:300@node:experiment_ncbi@reprocessed-srx |
296 / 300 | 296 · 4 · 0 | 691 | — | surveyed |
experiment_ncbi->run_ncbi:sra_be_runinfo |
sample:300@node:experiment_ncbi@reprocessed-srx |
296 / 300 | 296 · 4 · 0 | 691 | — | surveyed |
experiment_ncbi->sra_lite:ena_filereport_sra |
sample:300@node:experiment_ncbi@reprocessed-srx |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
experiment_ncbi->sra_lite:sra_be_runinfo_download |
sample:300@node:experiment_ncbi@reprocessed-srx |
0 / 300 (complete 282/288; downloadable 288/288; verifiable 0/288) | 288 · 12 · 0 | 664 | — | surveyed-none |
experiment_ncbi->sra_normalized:ena_filereport_sra |
sample:300@node:experiment_ncbi@reprocessed-srx |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
experiment_ncbi->submission_ncbi:ddbj_dblink |
sample:300@node:experiment_ncbi@reprocessed-srx |
300 / 300 | 300 · 0 · 0 | 290 | — | surveyed |
experiment_ncbi->submission_ncbi:esummary_sra |
sample:300@node:experiment_ncbi@reprocessed-srx |
296 / 300 | 296 · 4 · 0 | 287 | — | surveyed |
experiment_ncbi->submission_ncbi:sra_be_runinfo |
sample:300@node:experiment_ncbi@reprocessed-srx |
296 / 300 | 296 · 4 · 0 | 287 | — | surveyed |
geo_platform->geo_sample:geo_acc_platform |
node:geo_platform@results-of:link:geo_series->geo_platform:geo_soft_family@sample:300@node:geo_series@reprocessed-gse |
51 / 51 | 51 · 0 · 0 | 4948260 | — | surveyed |
geo_platform->geo_series:gds_esummary_platform |
node:geo_platform@results-of:link:geo_series->geo_platform:geo_soft_family@sample:300@node:geo_series@reprocessed-gse |
51 / 51 | 51 · 0 · 0 | 161444 | — | surveyed |
geo_platform->geo_series:geo_acc_platform |
node:geo_platform@results-of:link:geo_series->geo_platform:geo_soft_family@sample:300@node:geo_series@reprocessed-gse |
51 / 51 | 51 · 0 · 0 | 161501 | — | surveyed |
geo_sample->bioproject:elink_gds_bioproject |
sample:300@node:geo_sample@reprocessed-sample |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
geo_sample->experiment_ncbi:elink_gds_sra |
sample:300@node:geo_sample@reprocessed-sample |
286 / 300 | 286 · 14 · 0 | 286 | — | surveyed |
geo_sample->experiment_ncbi:esummary_sra |
sample:300@node:geo_sample@reprocessed-sample |
286 / 300 | 286 · 14 · 0 | 286 | — | surveyed |
geo_sample->experiment_ncbi:gds_esummary_sample |
sample:300@node:geo_sample@reprocessed-sample |
300 / 300 | 300 · 0 · 0 | 300 | — | surveyed |
geo_sample->experiment_ncbi:sra_be_runinfo |
sample:300@node:geo_sample@reprocessed-sample |
285 / 300 | 285 · 15 · 0 | 285 | — | surveyed |
geo_sample->geo_platform:gds_esummary_sample |
sample:300@node:geo_sample@reprocessed-sample |
300 / 300 | 300 · 0 · 0 | 23 | — | surveyed |
geo_sample->geo_platform:geo_acc_sample |
sample:300@node:geo_sample@reprocessed-sample |
300 / 300 | 300 · 0 · 0 | 23 | — | surveyed |
geo_sample->geo_series:gds_esummary_sample |
sample:300@node:geo_sample@reprocessed-sample |
300 / 300 | 300 · 0 · 0 | 337 | — | surveyed |
geo_sample->geo_supplementary:geo_acc_sample |
sample:300@node:geo_sample@reprocessed-sample |
194 / 300 (downloadable 194/194; size-checkable 194/194) | 194 · 106 · 0 | 475 | — | surveyed |
geo_sample->sra_lite:sra_be_runinfo_download |
sample:300@node:geo_sample@reprocessed-sample |
0 / 300 (complete 278/279; downloadable 279/279; verifiable 0/279) | 279 · 21 · 0 | 809 | — | surveyed-none |
geo_sample->submission_ncbi:esummary_sra |
sample:300@node:geo_sample@reprocessed-sample |
286 / 300 | 286 · 14 · 0 | 274 | — | surveyed |
geo_sample->submission_ncbi:sra_be_runinfo |
sample:300@node:geo_sample@reprocessed-sample |
285 / 300 | 285 · 15 · 0 | 273 | — | surveyed |
geo_series->ae_experiment:biostudies_search |
sample:300@node:geo_series@reprocessed-gse |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
geo_series->analysis_ncbi:ddbj_dblink |
sample:300@node:geo_series@reprocessed-gse |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
geo_series->bioproject:ddbj_dblink |
sample:300@node:geo_series@reprocessed-gse |
289 / 300 | 289 · 11 · 0 | 289 | — | surveyed |
geo_series->bioproject:elink_gds_bioproject |
sample:300@node:geo_series@reprocessed-gse |
300 / 300 | 300 · 0 · 0 | 293 | — | surveyed |
geo_series->bioproject:ena_search_study |
sample:300@node:geo_series@reprocessed-gse |
289 / 300 | 289 · 11 · 0 | 289 | — | surveyed |
geo_series->bioproject:ena_xref_source |
sample:300@node:geo_series@reprocessed-gse |
289 / 300 | 289 · 11 · 0 | 289 | — | surveyed |
geo_series->bioproject:geo_acc_series |
sample:300@node:geo_series@reprocessed-gse |
289 / 300 | 289 · 11 · 0 | 289 | — | surveyed |
geo_series->bioproject:sra_be_runinfo |
sample:300@node:geo_series@reprocessed-gse |
248 / 300 | 248 · 52 · 0 | 248 | — | surveyed |
geo_series->experiment_ncbi:ddbj_dblink |
sample:300@node:geo_series@reprocessed-gse |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
geo_series->experiment_ncbi:sra_be_runinfo |
sample:300@node:geo_series@reprocessed-gse |
248 / 300 | 248 · 52 · 0 | 5373 | — | surveyed |
geo_series->geo_platform:gds_esummary_series |
sample:300@node:geo_series@reprocessed-gse |
300 / 300 | 300 · 0 · 0 | 51 | — | surveyed |
geo_series->geo_platform:geo_acc_series |
sample:300@node:geo_series@reprocessed-gse |
300 / 300 | 300 · 0 · 0 | 51 | — | surveyed |
geo_series->geo_platform:geo_soft_family |
sample:300@node:geo_series@reprocessed-gse |
300 / 300 | 300 · 0 · 0 | 51 | — | surveyed |
geo_series->geo_sample:geo_acc_series |
sample:300@node:geo_series@reprocessed-gse |
300 / 300 | 300 · 0 · 0 | 9042 | — | surveyed |
geo_series->geo_sample:sra_be_runinfo |
sample:300@node:geo_series@reprocessed-gse |
248 / 300 | 248 · 52 · 0 | 5344 | — | surveyed |
geo_series->geo_supplementary:geo_acc_series |
sample:300@node:geo_series@reprocessed-gse |
296 / 300 (downloadable 296/296; size-checkable 296/296) | 296 · 4 · 0 | 563 | — | surveyed |
geo_series->geo_supplementary:geo_soft_family |
sample:300@node:geo_series@reprocessed-gse |
296 / 300 (downloadable 296/296; size-checkable 296/296) | 296 · 4 · 0 | 7392 | — | surveyed |
geo_series->run_ncbi:ddbj_dblink |
sample:300@node:geo_series@reprocessed-gse |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
geo_series->run_ncbi:sra_be_runinfo |
sample:300@node:geo_series@reprocessed-gse |
248 / 300 | 248 · 52 · 0 | 13810 | — | surveyed |
geo_series->sra_lite:sra_be_runinfo_download |
sample:300@node:geo_series@reprocessed-gse |
0 / 300 (complete 231/246; downloadable 246/246; verifiable 0/246) | 246 · 54 · 0 | 13547 | — | surveyed-none |
geo_series->study_ncbi:ddbj_dblink |
sample:300@node:geo_series@reprocessed-gse |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
geo_series->study_ncbi:ena_xref_source |
sample:300@node:geo_series@reprocessed-gse |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
geo_series->submission_ncbi:ddbj_dblink |
sample:300@node:geo_series@reprocessed-gse |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
geo_series->submission_ncbi:sra_be_runinfo |
sample:300@node:geo_series@reprocessed-gse |
248 / 300 | 248 · 52 · 0 | 260 | — | surveyed |
run_ddbj->analysis_ddbj:ddbj_dblink |
sample:300@node:run_ddbj@reprocessed-srr |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
run_ddbj->experiment_ddbj:ddbj_dblink |
sample:300@node:run_ddbj@reprocessed-srr |
300 / 300 | 300 · 0 · 0 | 256 | — | surveyed |
run_ddbj->experiment_ddbj:esummary_sra |
sample:300@node:run_ddbj@reprocessed-srr |
300 / 300 | 300 · 0 · 0 | 256 | — | surveyed |
run_ddbj->experiment_ddbj:sra_be_runinfo |
sample:300@node:run_ddbj@reprocessed-srr |
300 / 300 | 300 · 0 · 0 | 256 | — | surveyed |
run_ddbj->submission_ddbj:ddbj_dblink |
sample:300@node:run_ddbj@reprocessed-srr |
300 / 300 | 300 · 0 · 0 | 101 | — | surveyed |
run_ddbj->submission_ddbj:esummary_sra |
sample:300@node:run_ddbj@reprocessed-srr |
300 / 300 | 300 · 0 · 0 | 101 | — | surveyed |
run_ddbj->submission_ddbj:sra_be_runinfo |
sample:300@node:run_ddbj@reprocessed-srr |
300 / 300 | 300 · 0 · 0 | 101 | — | surveyed |
run_ebi->analysis_ebi:ddbj_dblink |
sample:300@node:run_ebi@reprocessed-srr |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
run_ebi->experiment_ebi:ddbj_dblink |
sample:300@node:run_ebi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 287 | — | surveyed |
run_ebi->experiment_ebi:esummary_sra |
sample:300@node:run_ebi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 287 | — | surveyed |
run_ebi->experiment_ebi:sra_be_runinfo |
sample:300@node:run_ebi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 287 | — | surveyed |
run_ebi->submission_ebi:ddbj_dblink |
sample:300@node:run_ebi@reprocessed-srr |
300 / 300 | 300 · 0 · 0 | 150 | — | surveyed |
run_ebi->submission_ebi:esummary_sra |
sample:300@node:run_ebi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 148 | — | surveyed |
run_ebi->submission_ebi:sra_be_runinfo |
sample:300@node:run_ebi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 149 | — | surveyed |
run_ncbi->ae_experiment:ena_filereport_aliases |
sample:300@node:run_ncbi@reprocessed-srr |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
run_ncbi->analysis_ncbi:ddbj_dblink |
sample:300@node:run_ncbi@reprocessed-srr |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
run_ncbi->experiment_ncbi:ddbj_dblink |
sample:300@node:run_ncbi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 297 | — | surveyed |
run_ncbi->experiment_ncbi:esummary_sra |
sample:300@node:run_ncbi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 297 | — | surveyed |
run_ncbi->experiment_ncbi:sra_be_runinfo |
sample:300@node:run_ncbi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 297 | — | surveyed |
run_ncbi->geo_sample:sra_be_runinfo |
sample:300@node:run_ncbi@reprocessed-srr |
272 / 300 | 272 · 28 · 0 | 270 | — | surveyed |
run_ncbi->geo_series:ddbj_dblink |
sample:300@node:run_ncbi@reprocessed-srr |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
run_ncbi->submission_ncbi:ddbj_dblink |
sample:300@node:run_ncbi@reprocessed-srr |
300 / 300 | 300 · 0 · 0 | 275 | — | surveyed |
run_ncbi->submission_ncbi:esummary_sra |
sample:300@node:run_ncbi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 274 | — | surveyed |
run_ncbi->submission_ncbi:sra_be_runinfo |
sample:300@node:run_ncbi@reprocessed-srr |
299 / 300 | 299 · 1 · 0 | 274 | — | surveyed |
sample_ddbj->analysis_ddbj:ddbj_dblink |
sample:300@node:sample_ddbj@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ddbj->bioproject:ddbj_dblink |
sample:300@node:sample_ddbj@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ddbj->run_ddbj:ddbj_dblink |
sample:300@node:sample_ddbj@reprocessed-srs |
300 / 300 | 300 · 0 · 0 | 408 | — | surveyed |
sample_ddbj->run_ddbj:esummary_sra |
sample:300@node:sample_ddbj@reprocessed-srs |
300 / 300 | 300 · 0 · 0 | 408 | — | surveyed |
sample_ddbj->run_ddbj:sra_be_runinfo |
sample:300@node:sample_ddbj@reprocessed-srs |
300 / 300 | 300 · 0 · 0 | 408 | — | surveyed |
sample_ddbj->sra_lite:ena_filereport_sra |
sample:300@node:sample_ddbj@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ddbj->sra_lite:sra_be_runinfo_download |
sample:300@node:sample_ddbj@reprocessed-srs |
0 / 300 (complete 287/293; downloadable 293/293; verifiable 0/293) | 293 · 7 · 0 | 386 | — | surveyed-none |
sample_ddbj->sra_normalized:ena_filereport_sra |
sample:300@node:sample_ddbj@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ddbj->submission_ddbj:ddbj_dblink |
sample:300@node:sample_ddbj@reprocessed-srs |
300 / 300 | 300 · 0 · 0 | 113 | — | surveyed |
sample_ddbj->submission_ddbj:ena_search_sample |
sample:300@node:sample_ddbj@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ddbj->submission_ddbj:esummary_sra |
sample:300@node:sample_ddbj@reprocessed-srs |
300 / 300 | 300 · 0 · 0 | 113 | — | surveyed |
sample_ddbj->submission_ddbj:sra_be_runinfo |
sample:300@node:sample_ddbj@reprocessed-srs |
300 / 300 | 300 · 0 · 0 | 113 | — | surveyed |
sample_ebi->analysis_ebi:ddbj_dblink |
sample:300@node:sample_ebi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ebi->analysis_ebi:ena_filereport_analysis |
sample:300@node:sample_ebi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ebi->bioproject:ddbj_dblink |
sample:300@node:sample_ebi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ebi->bioproject:ena_filereport_analysis |
sample:300@node:sample_ebi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ebi->experiment_ebi:ena_filereport_analysis |
sample:300@node:sample_ebi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ebi->run_ebi:ddbj_dblink |
sample:300@node:sample_ebi@reprocessed-srs |
300 / 300 | 300 · 0 · 0 | 2014 | — | surveyed |
sample_ebi->run_ebi:ena_filereport_analysis |
sample:300@node:sample_ebi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ebi->run_ebi:esummary_sra |
sample:300@node:sample_ebi@reprocessed-srs |
300 / 300 | 300 · 0 · 0 | 2014 | — | surveyed |
sample_ebi->run_ebi:sra_be_runinfo |
sample:300@node:sample_ebi@reprocessed-srs |
299 / 300 | 299 · 1 · 0 | 2012 | — | surveyed |
sample_ebi->sra_lite:ena_filereport_sra |
sample:300@node:sample_ebi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ebi->sra_lite:sra_be_runinfo_download |
sample:300@node:sample_ebi@reprocessed-srs |
0 / 300 (complete 288/299; downloadable 299/299; verifiable 0/299) | 299 · 1 · 0 | 1996 | — | surveyed-none |
sample_ebi->sra_normalized:ena_filereport_sra |
sample:300@node:sample_ebi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ebi->study_ebi:ena_filereport_analysis |
sample:300@node:sample_ebi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ebi->submission_ebi:ddbj_dblink |
sample:300@node:sample_ebi@reprocessed-srs |
300 / 300 | 300 · 0 · 0 | 200 | — | surveyed |
sample_ebi->submission_ebi:ena_filereport_analysis |
sample:300@node:sample_ebi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ebi->submission_ebi:ena_search_sample |
sample:300@node:sample_ebi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ebi->submission_ebi:esummary_sra |
sample:300@node:sample_ebi@reprocessed-srs |
300 / 300 | 300 · 0 · 0 | 181 | — | surveyed |
sample_ebi->submission_ebi:sra_be_runinfo |
sample:300@node:sample_ebi@reprocessed-srs |
299 / 300 | 299 · 1 · 0 | 181 | — | surveyed |
sample_ncbi->analysis_ncbi:ddbj_dblink |
sample:300@node:sample_ncbi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ncbi->bioproject:ddbj_dblink |
sample:300@node:sample_ncbi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ncbi->geo_series:ddbj_dblink |
sample:300@node:sample_ncbi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ncbi->run_ncbi:ddbj_dblink |
sample:300@node:sample_ncbi@reprocessed-srs |
299 / 300 | 299 · 1 · 0 | 874 | — | surveyed |
sample_ncbi->run_ncbi:esummary_sra |
sample:300@node:sample_ncbi@reprocessed-srs |
299 / 300 | 299 · 1 · 0 | 874 | — | surveyed |
sample_ncbi->run_ncbi:sra_be_runinfo |
sample:300@node:sample_ncbi@reprocessed-srs |
299 / 300 | 299 · 1 · 0 | 874 | — | surveyed |
sample_ncbi->sra_lite:ena_filereport_sra |
sample:300@node:sample_ncbi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ncbi->sra_lite:sra_be_runinfo_download |
sample:300@node:sample_ncbi@reprocessed-srs |
0 / 300 (complete 290/296; downloadable 296/296; verifiable 0/296) | 296 · 4 · 0 | 862 | — | surveyed-none |
sample_ncbi->sra_normalized:ena_filereport_sra |
sample:300@node:sample_ncbi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ncbi->submission_ncbi:ddbj_dblink |
sample:300@node:sample_ncbi@reprocessed-srs |
300 / 300 | 300 · 0 · 0 | 284 | — | surveyed |
sample_ncbi->submission_ncbi:ena_search_sample |
sample:300@node:sample_ncbi@reprocessed-srs |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
sample_ncbi->submission_ncbi:esummary_sra |
sample:300@node:sample_ncbi@reprocessed-srs |
299 / 300 | 299 · 1 · 0 | 288 | — | surveyed |
sample_ncbi->submission_ncbi:sra_be_runinfo |
sample:300@node:sample_ncbi@reprocessed-srs |
299 / 300 | 299 · 1 · 0 | 289 | — | surveyed |
study_ddbj->analysis_ddbj:ddbj_dblink |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
1 / 137 | 1 · 136 · 0 | 1 | — | surveyed |
study_ddbj->bam:sdl |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
study_ddbj->bam:sdl_original |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
study_ddbj->bioproject:ddbj_dblink |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 137 | — | surveyed |
study_ddbj->bioproject:ena_search_study |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 137 | — | surveyed |
study_ddbj->bioproject:esummary_sra |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 137 | — | surveyed |
study_ddbj->bioproject:sra_be_runinfo |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 137 | — | surveyed |
study_ddbj->cram:sdl |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
study_ddbj->cram:sdl_original |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
study_ddbj->fastq:sdl |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
study_ddbj->fastq:sdl_original |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
study_ddbj->run_ddbj:ddbj_dblink |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 2312 | — | surveyed |
study_ddbj->run_ddbj:esummary_sra |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 2308 | — | surveyed |
study_ddbj->run_ddbj:sra_be_runinfo |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 2308 | — | surveyed |
study_ddbj->sra_lite:ena_filereport_sra |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
study_ddbj->sra_lite:sdl_lite |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
121 / 137 (complete 121/135; downloadable 135/135; verifiable 135/135) | 135 · 2 · 0 | 2254 | — | surveyed |
study_ddbj->sra_lite:sra_be_runinfo_download |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 137 (complete 123/135; downloadable 135/135; verifiable 0/135) | 135 · 2 · 0 | 2250 | — | surveyed-none |
study_ddbj->sra_normalized:ena_filereport_sra |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 137 | 0 · 137 · 0 | 0 | — | surveyed-none |
study_ddbj->sra_normalized:sdl |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
123 / 137 (complete 123/137; downloadable 137/137; verifiable 137/137) | 137 · 0 · 0 | 2312 | — | surveyed |
study_ddbj->submission_ddbj:ddbj_dblink |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 166 | — | surveyed |
study_ddbj->submission_ddbj:esummary_sra |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 192 | — | surveyed |
study_ddbj->submission_ddbj:sra_be_runinfo |
node:study_ddbj@results-of:bioproject->study:ena_filereport@reprocessed-prj |
137 / 137 | 137 · 0 · 0 | 192 | — | surveyed |
study_ebi->ae_experiment:ena_filereport_aliases |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
236 / 300 | 236 · 64 · 0 | 236 | — | surveyed |
study_ebi->ae_experiment:ena_xref_target |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
9 / 300 | 9 · 291 · 0 | 9 | — | surveyed |
study_ebi->analysis_ebi:ddbj_dblink |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ebi->analysis_ebi:ena_filereport_analysis |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ebi->bioproject:ddbj_dblink |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 300 | — | surveyed |
study_ebi->bioproject:ena_filereport_analysis |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ebi->bioproject:ena_search_study |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 300 | — | surveyed |
study_ebi->bioproject:esummary_sra |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 301 | — | surveyed |
study_ebi->bioproject:sra_be_runinfo |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 301 | — | surveyed |
study_ebi->experiment_ebi:ena_filereport_analysis |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ebi->run_ebi:ddbj_dblink |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 93743 | — | surveyed |
study_ebi->run_ebi:ena_filereport_analysis |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ebi->run_ebi:esummary_sra |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 93740 | — | surveyed |
study_ebi->run_ebi:sra_be_runinfo |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 93740 | — | surveyed |
study_ebi->sra_lite:ena_filereport_sra |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ebi->sra_lite:sra_be_runinfo_download |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 (complete 283/298; downloadable 298/298; verifiable 0/298) | 298 · 2 · 0 | 92125 | — | surveyed-none |
study_ebi->sra_normalized:ena_filereport_sra |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ebi->submission_ebi:ddbj_dblink |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 300 | — | surveyed |
study_ebi->submission_ebi:ena_filereport_analysis |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ebi->submission_ebi:esummary_sra |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 631 | — | surveyed |
study_ebi->submission_ebi:sra_be_runinfo |
sample:300@node:study_ebi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 648 | — | surveyed |
study_ncbi->ae_experiment:ena_filereport_aliases |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ncbi->ae_experiment:ena_xref_target |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ncbi->analysis_ncbi:ddbj_dblink |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ncbi->bam:sdl |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
4 / 300 (complete 4/4; downloadable 4/4; verifiable 4/4) | 4 · 295 · 1 | 118 | — | surveyed |
study_ncbi->bam:sdl_original |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
3 / 300 (complete 4/4; downloadable 3/4; verifiable 4/4) | 4 · 295 · 1 | 131 | — | surveyed |
study_ncbi->bioproject:ddbj_dblink |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 299 | — | surveyed |
study_ncbi->bioproject:ena_search_study |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 299 | — | surveyed |
study_ncbi->bioproject:esummary_sra |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
298 / 300 | 298 · 2 · 0 | 298 | — | surveyed |
study_ncbi->bioproject:sra_be_runinfo |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 299 | — | surveyed |
study_ncbi->cram:sdl |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 299 · 1 | 0 | — | surveyed-none |
study_ncbi->cram:sdl_original |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 299 · 1 | 0 | — | surveyed-none |
study_ncbi->fastq:sdl |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
3 / 300 (complete 3/4; downloadable 4/4; verifiable 4/4) | 4 · 295 · 1 | 26 | — | surveyed |
study_ncbi->fastq:sdl_original |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 (complete 282/298; downloadable 0/298; verifiable 298/298) | 298 · 1 · 1 | 17262 | — | surveyed-none |
study_ncbi->geo_series:ddbj_dblink |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ncbi->geo_series:ena_xref_target |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ncbi->run_ncbi:ddbj_dblink |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 8525 | — | surveyed |
study_ncbi->run_ncbi:esummary_sra |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 8525 | — | surveyed |
study_ncbi->run_ncbi:sra_be_runinfo |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 8525 | — | surveyed |
study_ncbi->sra_lite:ena_filereport_sra |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ncbi->sra_lite:sdl_lite |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
283 / 300 (complete 283/295; downloadable 295/295; verifiable 295/295) | 295 · 5 · 0 | 8272 | — | surveyed |
study_ncbi->sra_lite:sra_be_runinfo_download |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 (complete 283/295; downloadable 295/295; verifiable 0/295) | 295 · 5 · 0 | 8271 | — | surveyed-none |
study_ncbi->sra_normalized:ena_filereport_sra |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
0 / 300 | 0 · 300 · 0 | 0 | — | surveyed-none |
study_ncbi->sra_normalized:sdl |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
287 / 300 (complete 287/299; downloadable 299/299; verifiable 299/299) | 299 · 0 · 1 | 6492 | — | surveyed |
study_ncbi->submission_ncbi:ddbj_dblink |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 300 | — | surveyed |
study_ncbi->submission_ncbi:esummary_sra |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 325 | — | surveyed |
study_ncbi->submission_ncbi:sra_be_runinfo |
sample:300@node:study_ncbi@results-of:bioproject->study:ena_filereport@reprocessed-prj |
300 / 300 | 300 · 0 · 0 | 322 | — | surveyed |
submission_ddbj->analysis_ddbj:ddbj_dblink |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
0 / 96 | 0 · 96 · 0 | 0 | — | surveyed-none |
submission_ddbj->bam:ena_filereport_bam |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
0 / 96 | 0 · 96 · 0 | 0 | — | surveyed-none |
submission_ddbj->bam:ena_filereport_submitted |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
0 / 96 | 0 · 96 · 0 | 0 | — | surveyed-none |
submission_ddbj->bioproject:ddbj_dblink |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
0 / 96 | 0 · 96 · 0 | 0 | — | surveyed-none |
submission_ddbj->bioproject:esummary_sra |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
95 / 96 | 95 · 1 · 0 | 94 | — | surveyed |
submission_ddbj->cram:ena_filereport_submitted |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
0 / 96 | 0 · 96 · 0 | 0 | — | surveyed-none |
submission_ddbj->experiment_ddbj:ddbj_dblink |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
96 / 96 | 96 · 0 · 0 | 1139 | — | surveyed |
submission_ddbj->experiment_ddbj:esummary_sra |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
96 / 96 | 96 · 0 · 0 | 1331 | — | surveyed |
submission_ddbj->fastq:ena_filereport_fastq |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
86 / 96 (complete 93/96; downloadable 89/96; verifiable 96/96) | 96 · 0 · 0 | 3037 | — | surveyed |
submission_ddbj->fastq:ena_filereport_submitted |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
0 / 96 | 0 · 96 · 0 | 0 | — | surveyed-none |
submission_ddbj->run_ddbj:ddbj_dblink |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
96 / 96 | 96 · 0 · 0 | 1553 | — | surveyed |
submission_ddbj->run_ddbj:esummary_sra |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
96 / 96 | 96 · 0 · 0 | 1743 | — | surveyed |
submission_ddbj->sra_lite:ena_filereport_sra |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
0 / 96 | 0 · 96 · 0 | 0 | — | surveyed-none |
submission_ddbj->sra_normalized:ena_filereport_sra |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
0 / 96 | 0 · 96 · 0 | 0 | — | surveyed-none |
submission_ddbj->study_ddbj:ddbj_dblink |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
93 / 96 | 93 · 3 · 0 | 92 | — | surveyed |
submission_ddbj->study_ddbj:esummary_sra |
node:submission_ddbj@results-of:link:run_ddbj->submission_ddbj:ena_filereport@sample:300@node:run_ddbj@reprocessed-srr |
95 / 96 | 95 · 1 · 0 | 94 | — | surveyed |
submission_ebi->ae_experiment:ena_filereport_aliases |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
112 / 149 | 112 · 37 · 0 | 109 | — | surveyed |
submission_ebi->analysis_ebi:ddbj_dblink |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
0 / 149 | 0 · 149 · 0 | 0 | — | surveyed-none |
submission_ebi->bam:ena_filereport_bam |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
44 / 149 (complete 49/49; downloadable 44/49; verifiable 49/49) | 49 · 100 · 0 | 3555 | — | surveyed |
submission_ebi->bam:ena_filereport_submitted |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
2 / 149 (complete 2/2; downloadable 2/2; verifiable 2/2) | 2 · 147 · 0 | 130 | — | surveyed |
submission_ebi->bioproject:ddbj_dblink |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
0 / 149 | 0 · 149 · 0 | 0 | — | surveyed-none |
submission_ebi->bioproject:esummary_sra |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
149 / 149 | 149 · 0 · 0 | 139 | — | surveyed |
submission_ebi->cram:ena_filereport_submitted |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
23 / 149 (complete 23/23; downloadable 23/23; verifiable 23/23) | 23 · 126 · 0 | 5250 | — | surveyed |
submission_ebi->experiment_ebi:ddbj_dblink |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
149 / 149 | 149 · 0 · 0 | 9484 | — | surveyed |
submission_ebi->experiment_ebi:esummary_sra |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
149 / 149 | 149 · 0 · 0 | 9488 | — | surveyed |
submission_ebi->fastq:ena_filereport_fastq |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
61 / 149 (complete 74/79; downloadable 66/79; verifiable 79/79) | 79 · 70 · 0 | 17985 | — | surveyed |
submission_ebi->fastq:ena_filereport_submitted |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
116 / 149 (complete 116/124; downloadable 124/124; verifiable 124/124) | 124 · 25 · 0 | 31469 | — | surveyed |
submission_ebi->run_ebi:ddbj_dblink |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
149 / 149 | 149 · 0 · 0 | 16812 | — | surveyed |
submission_ebi->run_ebi:esummary_sra |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
149 / 149 | 149 · 0 · 0 | 16824 | — | surveyed |
submission_ebi->sra_lite:ena_filereport_sra |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
0 / 149 | 0 · 149 · 0 | 0 | — | surveyed-none |
submission_ebi->sra_normalized:ena_filereport_sra |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
0 / 149 | 0 · 149 · 0 | 0 | — | surveyed-none |
submission_ebi->study_ebi:ddbj_dblink |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
109 / 149 | 109 · 40 · 0 | 109 | — | surveyed |
submission_ebi->study_ebi:esummary_sra |
node:submission_ebi@results-of:link:run_ebi->submission_ebi:ena_filereport@sample:300@node:run_ebi@reprocessed-srr |
149 / 149 | 149 · 0 · 0 | 135 | — | surveyed |
submission_ncbi->ae_experiment:ena_filereport_aliases |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
0 / 274 | 0 · 274 · 0 | 0 | — | surveyed-none |
submission_ncbi->analysis_ncbi:ddbj_dblink |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
0 / 274 | 0 · 274 · 0 | 0 | — | surveyed-none |
submission_ncbi->bam:ena_filereport_bam |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
0 / 274 | 0 · 274 · 0 | 0 | — | surveyed-none |
submission_ncbi->bam:ena_filereport_submitted |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
1 / 274 (complete 1/1; downloadable 1/1; verifiable 1/1) | 1 · 273 · 0 | 12 | — | surveyed |
submission_ncbi->bioproject:ddbj_dblink |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
0 / 274 | 0 · 274 · 0 | 0 | — | surveyed-none |
submission_ncbi->bioproject:esummary_sra |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
274 / 274 | 274 · 0 · 0 | 272 | — | surveyed |
submission_ncbi->cram:ena_filereport_submitted |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
0 / 274 | 0 · 274 · 0 | 0 | — | surveyed-none |
submission_ncbi->experiment_ncbi:ddbj_dblink |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
161 / 274 | 161 · 113 · 0 | 7262 | — | surveyed |
submission_ncbi->experiment_ncbi:esummary_sra |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
274 / 274 | 274 · 0 · 0 | 9698 | — | surveyed |
submission_ncbi->fastq:ena_filereport_fastq |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
166 / 274 (complete 166/274; downloadable 274/274; verifiable 274/274) | 274 · 0 · 0 | 51346 | — | surveyed |
submission_ncbi->fastq:ena_filereport_submitted |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
0 / 274 | 0 · 274 · 0 | 0 | — | surveyed-none |
submission_ncbi->geo_sample:ena_filereport_aliases |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
251 / 274 | 251 · 23 · 0 | 6571 | — | surveyed |
submission_ncbi->geo_series:ddbj_dblink |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
0 / 274 | 0 · 274 · 0 | 0 | — | surveyed-none |
submission_ncbi->geo_series:ena_filereport_aliases |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
251 / 274 | 251 · 23 · 0 | 251 | — | surveyed |
submission_ncbi->run_ncbi:ddbj_dblink |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
274 / 274 | 274 · 0 · 0 | 31889 | — | surveyed |
submission_ncbi->run_ncbi:esummary_sra |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
274 / 274 | 274 · 0 · 0 | 32382 | — | surveyed |
submission_ncbi->sra_lite:ena_filereport_sra |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
0 / 274 | 0 · 274 · 0 | 0 | — | surveyed-none |
submission_ncbi->sra_normalized:ena_filereport_sra |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
0 / 274 | 0 · 274 · 0 | 0 | — | surveyed-none |
submission_ncbi->study_ncbi:ddbj_dblink |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
261 / 274 | 261 · 13 · 0 | 261 | — | surveyed |
submission_ncbi->study_ncbi:esummary_sra |
node:submission_ncbi@results-of:link:run_ncbi->submission_ncbi:ena_filereport@sample:300@node:run_ncbi@reprocessed-srr |
274 / 274 | 274 · 0 · 0 | 272 | — | surveyed |